Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01200 ATGTCTCGAACACCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAAAGAGACAGGAACCATGACGAACTCTTGCTGGAAAAGTCCGACAACTTATCGACTTCGCCTGCATTTCTCTCCGTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGGATGGCCGATAAGGACCGAGCGAGGACCAGGAGTGCCCGCCAGATTTCGTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCATTGGCTTCAATCACGAATGGTATCGTTTATCTAGTCCGCACTGCCAATCGTCGGATTTCATCGCCCGATTCACCAGCTGATTCAGCCACGTCTCGGCTCTACAGGATTATCAAAGTGTTCTTGATTGTAGTGCTTCTATTGCTCGTTTTTGAGCTCGTAGCGTACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTTCTGCTTCTGCGGAGGTGCTTGGATTCATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGGGGAAATTACCTGTCTCCATCGCTGCAGTGCTTGATCAATCTCTGCATTGTATTGTTCCTGATCCAGTCAGTGGATCGTTTGCTTCTAATGCTGGGGTGTTTTTGGATCAAGTTCAGGCGATTGAAGCCCGTTGCAGCGTTCGAGTACTCTTCCACGGGCGAAAACGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAACGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAAAATGCTCATACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAGCTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGGATATTGTATAGACACCGCCTCATACGTACGGGCTACAAGGCAGGGAATCTCAAATCTGCCATGGGGTGCGATTACGTTAAAGATTACGAGTTCGTGGCCATCTTTGATGCAGATTTTCAGCCTGGACCAGACTTTTTAAAGAAAACTATTCCACATTTTAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCGTTCGTGAACAAGGACGAAAACTTGCTCACGAGATTGCAGAACATAAATCTATCCTTCCATTTCGAGGTCGAGCAGCAAGTTAATGGCATGTTCATCAATTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGCGGGGGCTGGTTAGAAAGAACAACGGTCGAGGACATGGATATTGCAGTCCGTGCTCATCTTTGTGGCTGGAAATTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATACGAAGCGTACAAGAAACAACAGCACCGGTGGCATTCGGGCCCGATGCAGCTATTTCGTTTGTGCTTCTTTGATGTACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCCAATTTGATCTTTCTGTTCTTCCTCTTGCGAAAGCTCATCCTTCCCTTCTATTCCTTTACCTTATTCTGCATAATTCTCCCCCTCTCCATGTTCCTTCCAGAAGCTCATCTTCCAGCTTGGGTTGTTTGCTATGTGCCCGGAATCATGTCCATCTTAAATATTCTTCCTGCACCGCGTTCGTTTCCGTTCTTAGTCCCCTATCTTCTATTCGAAAACACTATGTCCGTTACCAAATTCAATGCCATGATATCGGGGTTGTTCCGCTTTGGAAGTTCGTACGAATGGATAGTAACAAAGAAACTAGGAAGATCATCTGAAAACAATCTTGTTGCTTTGGAAAAGGAACTAGAACCTCTAGTTGAGGGTACGAGTCTTCATCGATCTTCCTCGGAATCAGGTCTGCAGGAACTGACCAAGCTCGAGATATCGAAAAAAGTAGGGAAAAACAAACGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCAGTCATTTTGTTGACTGCCTCAGTGAGAAGTCTGTTGTCTGCTCAAGGAATTCACTTCTACTTCCTATTGTTTCAGGGTATCTCTTTTCTAGTAGTGGGTCTTGATTTAATTGGAGAGCAGGTCAGTTAA 2085 45.08 MSRTPNYEFQEWWNKQRDRNHDELLLEKSDNLSTSPAFLSVEIRSSGSPGDRMADKDRARTRSARQISWVWLLKFQQIAGSLASITNGIVYLVRTANRRISSPDSPADSATSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGFIGFLYANWLQIRGNYLSPSLQCLINLCIVLFLIQSVDRLLLMLGCFWIKFRRLKPVAAFEYSSTGENAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLIQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFFDVLKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLSMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSENNLVALEKELEPLVEGTSLHRSSSESGLQELTKLEISKKVGKNKRNRLYRKELALAVILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9173740 9178458 + Carg11471-RA Car17g01200 165572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01200 694 PANTHER - 25 693 - -
Car17g01200 694 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 693 - -
Car17g01200 694 Pfam Glycosyl transferase family group 2 326 532 IPR001173 -
Car17g01200 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 511 IPR029044 -
Car17g01200 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 450 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00304 Car-Chr15:1646301 Car17g01200 Car-Chr17:9173740 0 dispersed
Car20g00489 Car-Chr20:2717349 Car17g01200 Car-Chr17:9173740 1.01E-141 dispersed
Car17g01200 Car-Chr17:9173740 Car08g00219 Car-Chr8:1375560 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01200 - - csv:101216681 1289.63