Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01200 ATGTCTCGAACACCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAAAGAGACAGGAACCATGACGAACTCTTGCTGGAAAAGTCCGACAACTTATCGACTTCGCCTGCATTTCTCTCCGTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGGATGGCCGATAAGGACCGAGCGAGGACCAGGAGTGCCCGCCAGATTTCGTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCATTGGCTTCAATCACGAATGGTATCGTTTATCTAGTCCGCACTGCCAATCGTCGGATTTCATCGCCCGATTCACCAGCTGATTCAGCCACGTCTCGGCTCTACAGGATTATCAAAGTGTTCTTGATTGTAGTGCTTCTATTGCTCGTTTTTGAGCTCGTAGCGTACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTTCTGCTTCTGCGGAGGTGCTTGGATTCATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGGGGAAATTACCTGTCTCCATCGCTGCAGTGCTTGATCAATCTCTGCATTGTATTGTTCCTGATCCAGTCAGTGGATCGTTTGCTTCTAATGCTGGGGTGTTTTTGGATCAAGTTCAGGCGATTGAAGCCCGTTGCAGCGTTCGAGTACTCTTCCACGGGCGAAAACGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAACGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAAAATGCTCATACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAGCTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGGATATTGTATAGACACCGCCTCATACGTACGGGCTACAAGGCAGGGAATCTCAAATCTGCCATGGGGTGCGATTACGTTAAAGATTACGAGTTCGTGGCCATCTTTGATGCAGATTTTCAGCCTGGACCAGACTTTTTAAAGAAAACTATTCCACATTTTAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCGTTCGTGAACAAGGACGAAAACTTGCTCACGAGATTGCAGAACATAAATCTATCCTTCCATTTCGAGGTCGAGCAGCAAGTTAATGGCATGTTCATCAATTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGCGGGGGCTGGTTAGAAAGAACAACGGTCGAGGACATGGATATTGCAGTCCGTGCTCATCTTTGTGGCTGGAAATTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATACGAAGCGTACAAGAAACAACAGCACCGGTGGCATTCGGGCCCGATGCAGCTATTTCGTTTGTGCTTCTTTGATGTACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCCAATTTGATCTTTCTGTTCTTCCTCTTGCGAAAGCTCATCCTTCCCTTCTATTCCTTTACCTTATTCTGCATAATTCTCCCCCTCTCCATGTTCCTTCCAGAAGCTCATCTTCCAGCTTGGGTTGTTTGCTATGTGCCCGGAATCATGTCCATCTTAAATATTCTTCCTGCACCGCGTTCGTTTCCGTTCTTAGTCCCCTATCTTCTATTCGAAAACACTATGTCCGTTACCAAATTCAATGCCATGATATCGGGGTTGTTCCGCTTTGGAAGTTCGTACGAATGGATAGTAACAAAGAAACTAGGAAGATCATCTGAAAACAATCTTGTTGCTTTGGAAAAGGAACTAGAACCTCTAGTTGAGGGTACGAGTCTTCATCGATCTTCCTCGGAATCAGGTCTGCAGGAACTGACCAAGCTCGAGATATCGAAAAAAGTAGGGAAAAACAAACGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCAGTCATTTTGTTGACTGCCTCAGTGAGAAGTCTGTTGTCTGCTCAAGGAATTCACTTCTACTTCCTATTGTTTCAGGGTATCTCTTTTCTAGTAGTGGGTCTTGATTTAATTGGAGAGCAGGTCAGTTAA 2085 45.08 MSRTPNYEFQEWWNKQRDRNHDELLLEKSDNLSTSPAFLSVEIRSSGSPGDRMADKDRARTRSARQISWVWLLKFQQIAGSLASITNGIVYLVRTANRRISSPDSPADSATSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGFIGFLYANWLQIRGNYLSPSLQCLINLCIVLFLIQSVDRLLLMLGCFWIKFRRLKPVAAFEYSSTGENAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLIQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFFDVLKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLSMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSENNLVALEKELEPLVEGTSLHRSSSESGLQELTKLEISKKVGKNKRNRLYRKELALAVILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9173740 9178458 + Carg11471-RA Car17g01200 165572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01200 694 PANTHER - 25 693 - -
Car17g01200 694 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 693 - -
Car17g01200 694 Pfam Glycosyl transferase family group 2 326 532 IPR001173 -
Car17g01200 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 511 IPR029044 -
Car17g01200 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 450 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01200 - - - csv:101216681 1289.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00304 Car-Chr15:1646301 Car17g01200 Car-Chr17:9173740 0 dispersed
Car20g00489 Car-Chr20:2717349 Car17g01200 Car-Chr17:9173740 1.01E-141 dispersed
Car17g01200 Car-Chr17:9173740 Car08g00219 Car-Chr8:1375560 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g01200 Car_Chr17 FPKM 27.523539 33.39093 28.433792 31.742378 25.044098 23.126768 26.204151 40.550339 35.703983 36.83757