Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g01201 | ATGGATGAGGATTTTGATATCCCTGCTGCGCCTGACATGAACGACGACTTCGATCTTCCTGATGAACCCGCTGCGCTTAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCACTATACTGGGACTTTGCTGGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGCACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATCTGGGTATTAAAACAATGAAGAAAAGTGAAAAAGCTCTTTTCACCATTCCTCCTGAACTGGCATATGGTGAATCTGGCTCCCCACCGACCATCCCTCCTAGTGCGACATTGCAGTTTGACGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGAACAAATGGGATAATCCGAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACTCTTGTTGCCAAAGCTGATGGAGTGGAATTTACCGTTGGGGATGGTTACTTTTGTCCTGCCGTTGCGAGGGCTGTAAAAACCATGAAGATAGGCGAAAAGGCGCTCCTCACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGAAAACCAGCCTTGAGTAACGAACGTGCAGTTCCACCGAATGCATCGCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTAAAAGAAGGAGAAGGGTATGAGAAGCCAAATGATGGAGCCATTGTGAAAGTAAAATTGACTGGGAAGTTGGGAGATGGCAAGGTATTTTTGAGGAAGGGATATGATGATGGTGAAGAGCCATTCGAGTTTAAAACAGACGAGGAACAAGTGATTGATGGCCTCGACAAAGCCGTGGCGACAATGAAGAAAGGAGAGATAGCCCTGGTGACAATAGCACAAGAGTATGCTTTTGGACCGTCCGAGTCGCAACAGGAACTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAGGTCGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGGTTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGCGTTGTTCAAGTCTGGAAAGTTTGCTAGAGCTTCAAAGAGATATGAGAAGGCGGTGAAGTTCATCGAATACGATTCTTCGTTTAGCGAAGACGAGAAAAAGCAGGCGAAGGCGTTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCAATACAACGAGGCAGAGAAATTGTGTACCAAGGTGCTGGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCATATATCGAACTAGCGGATTTCGATTTGGCTGAATTTGACATCAAGAAGGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAGTACAAAACACTGAAGGAGAAGGTGAAGGAATACAACAAAAAGGATGCCAAGTTCTACGGCAACATGTTTGCCAAAATGAAGAATTAG | 1650 | 44.3 | MDEDFDIPAAPDMNDDFDLPDEPAALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGNKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPAVARAVKTMKIGEKALLTVKPQYGFGEKGKPALSNERAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLTGKLGDGKVFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALVTIAQEYAFGPSESQQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKVEAAGKKKEEGNALFKSGKFARASKRYEKAVKFIEYDSSFSEDEKKQAKALKVACNLNNAACKLKLKQYNEAEKLCTKVLELESSNVKALYRRAQAYIELADFDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKN | 549 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 9178519 | 9182649 | - | Carg11472-RA | Car17g01201 | 165573 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g01201 | 549 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755 | |
| Car17g01201 | 549 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755 | |
| Car17g01201 | 549 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Car17g01201 | 549 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR001440 | GO:0005515 | |
| Car17g01201 | 549 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Car17g01201 | 549 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515 | |
| Car17g01201 | 549 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755 | |
| Car17g01201 | 549 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 169 | 257 | IPR001179 | GO:0003755 | |
| Car17g01201 | 549 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755 | |
| Car17g01201 | 549 | Coils | Coil | 515 | 535 | - | - | |
| Car17g01201 | 549 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00208 | Car-Chr1:1134863 | Car17g01201 | Car-Chr17:9178519 | 1.89E-09 | dispersed | |
| Car02g00987 | Car-Chr2:6984660 | Car17g01201 | Car-Chr17:9178519 | 4.18E-17 | dispersed | |
| Car16g00155 | Car-Chr16:873051 | Car17g01201 | Car-Chr17:9178519 | 3.94E-06 | dispersed | |
| Car20g00017 | Car-Chr20:92449 | Car17g01201 | Car-Chr17:9178519 | 3.30E-15 | dispersed | |
| Car17g01201 | Car-Chr17:9178519 | Car17g01202 | Car-Chr17:9183307 | 2.43E-07 | tandem | |
| Car07g01007 | Car-Chr7:5763826 | Car17g01201 | Car-Chr17:9178519 | 2.54E-06 | transposed | |
| Car07g01008 | Car-Chr7:5767915 | Car17g01201 | Car-Chr17:9178519 | 2.83E-13 | transposed | |
| Car12g00637 | Car-Chr12:4287039 | Car17g01201 | Car-Chr17:9178519 | 8.14E-09 | transposed | |
| Car14g01352 | Car-Chr14:11408176 | Car17g01201 | Car-Chr17:9178519 | 0 | transposed | |
| Car15g00106 | Car-Chr15:632230 | Car17g01201 | Car-Chr17:9178519 | 2.03E-09 | transposed | |
| Car20g00236 | Car-Chr20:1381723 | Car17g01201 | Car-Chr17:9178519 | 8.71E-11 | transposed | |
| Car17g01201 | Car-Chr17:9178519 | Car08g00220 | Car-Chr8:1383084 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g01201 | K09571 | - | csv:101214513 | 1012.68 |