Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01227 ATGCGCGGCGGCGATAAGAAGTCCGGTCTCAAATTTGCCGTAATGGCGGTGCTTCTGCTACTGATAGCGATCGAGGAAGCCGGAGTCGCGACGGTGACGGCGAGGCCGATTCGAGACTCCAGCGAATCATACGCTCATGTTCGCGTAGCTACGTTTCGGACATTCATCTTGGGAGTCGGTATGGACAATCCTGTGAATATCGTTGTTGGTTCTCACATATGGGTGGGAGATATCGAGTCTGTTTGGATTGATGGACTCGTATTGAACATCATTGGGGAAGATGCTGAGATTCAAACTAGTGATGGGAGGCAGGTGGTTGTAAAAATGTCGAATCTATATCCAAGGGATGCAGAAGCTCCTGCTACTGGAATTGACGATATGACTAGAATGTCGTATTTGAATGAGCCTGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAATCTGTATGATCCGTGTGTGATGGAGCAGTACAAGGGAGCACCAGTGGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTCGCATATAGGGCTATGATAACTAATGGGAAAAGCAACTCTATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCAAGGCTGCATCTGAAGGACGGTCTGTTCAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTTAGAAACAACAATTCAAGCCGTTTTGGGAAATTTGTTGAGATCCAATTTGACAAGAAGGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGAGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTACCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAGGTATAAACTGGGAAATCCGAAATCATTTCACTATCTAAATCAATCAAATTGTTATGAGCTGGCTGGTGTGAATGATGCTCATGATTATCTTGCCACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCCGAGTTGTGGCTGCAATACTCCATCTTGGTAATGTTGACTTTGCAAAAGGAGAGGAGTCTGATTCATCATTTATAAAAGATGAAGAATCAAAATTTCATCTTCAAATGACAGCAGAGCTTCTCATGTGTGATCCCAATGCATTAGAAGATGCTCTTTGCAAGCGCATTATGATTACACGGGAGGAAATCATCAAGAGAAGTCTTGATCCGCTTGGTGCAACTGTTAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTAGGTAAAATCAATGTTTCCATTGGGCAAGATCATGGCTCGGAATATCTGATCGGAGTACTTGATATTTATGGTTTTGAAAGCTTTAAAACAAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACACTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTCAAAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTTGATCTAATCGAGAAGGTTCAATTTTTTCTTCTTAACTATGCTCTTGGAGTTCAAAGATGCCACTCACAACTATCCGTCTCTGGCATAGCCTCTAATTCTTTGTGCCTTTGCAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGACAAAAATAAAGATTATGTGGTCGCTGAACATCAAGATTTGTTAATTGCTTCAAAATGTTCTTTTGTATCTGGCCTTTTCCCTCCTCCTGAGGAGGCGACCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGGTTTAAGTTACAACTACAGCAGTTGATGGAAACATTAAATTCAACCGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTACAACCTGCCATATTTGAGAATGCTACTGTTATGCAACAATTACGTCATGGAGGTGTTTTGGAGGCTGTTAGAATTAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTACGAAGAGATGGTAGCATGCAGGAAGATTCTAGAGAAGACAGGACTTGAAGGTTATCTGATAGGGAAATCAAAACTTTTCCTAAGAGGTAGTCTGATGGCTGAACTAGATGCACAAAGAACAAGAGTATATAGTGGAGCTGCCACAGTTATACAGAAGCATATCAAATCTCGAATTGAACGTAAAAAGTACATTCATATGCGAAGAAGTTGCACTCGTGTACAGTCATATTGGAGAGGTGTTCTTGCTCGTGAGTCATATGAAAGTAGGAGAAGAGAATCAGCTGCCCTCAAAATTCAAAGGAATAGTCTTGCATTTATTGCCAGGAGCATCCATATTAAAACAAGGCTCGCTGTAGTTGTTCTTCAGGCTGGTATACGAGCAATGGTTGCTCGGAGTGAATACAGACGTAGGAGGCAGGTTAACGCTGCTGCAATAGTTATTCAATCTTATTGGCGTCAGTATTTGAAGTCTAAGATGGTTGGAAATCCATCAACCGGTTCACAATGCGGATTGAACTCAAGAACTGCTGGTGAAGGTCTTAAGAAGCAAAGGATGGCTGACTCGGAAGAAAGAGAGGAGGGTCTTACCTTGCCTGCGTTGCTCAACAGCAGGACAGATGCCATTGATGAAACAATTGAAATGATTGCCAAGGAAAACCGTGTTTCTCCAAAAGAAATAGAAGAAGCATACTTTATTATTAAAGAGCCCGGTAGTCGAGTTGAAGAAGCAGAATCTATGGTCACTCTCAGAGCAGAAGTGGCTAATCTAAAGGCCATGTTGCAGGCTGAAAGACACAGAGCTAATGAGTTTGAAAGGAAGTATATTGCAACGCTGAAAATAAATGCAGAAGGATGTAGAAGACTAAAAGAAAACGAAAGGATGGTGCGTCAACTTCAGGACTGCATAAGCAGGATGATACATGGCTTGTCAAACCAAATCACGGAGATGAAAATGATCATGTGTACTCCTCCTAGGCCAGATGCATCTAGTTCTATTCCAAACAGGGTTCCGACGGATGCCACATCTAGTTGCTCTTATTCATCGTCAGAAGACTTCACCTTTCCTGTTCCAAGATCTGACAATGACAGGGAAGGGGGATTCTCTGACTACTTCTAA 3312 41.7 MRGGDKKSGLKFAVMAVLLLLIAIEEAGVATVTARPIRDSSESYAHVRVATFRTFILGVGMDNPVNIVVGSHIWVGDIESVWIDGLVLNIIGEDAEIQTSDGRQVVVKMSNLYPRDAEAPATGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISNLYDPCVMEQYKGAPVGELKPHVFAIADVAYRAMITNGKSNSILVSGESGAGKTETTKMLMCYLAFLGGKAASEGRSVQQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNVDFAKGEESDSSFIKDEESKFHLQMTAELLMCDPNALEDALCKRIMITREEIIKRSLDPLGATVSRDGLAKTIYSRLFDWLVGKINVSIGQDHGSEYLIGVLDIYGFESFKTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKVQFFLLNYALGVQRCHSQLSVSGIASNSLCLCRNQVESLLFLMKLDKNKDYVVAEHQDLLIASKCSFVSGLFPPPEEATKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRHGGVLEAVRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEMVACRKILEKTGLEGYLIGKSKLFLRGSLMAELDAQRTRVYSGAATVIQKHIKSRIERKKYIHMRRSCTRVQSYWRGVLARESYESRRRESAALKIQRNSLAFIARSIHIKTRLAVVVLQAGIRAMVARSEYRRRRQVNAAAIVIQSYWRQYLKSKMVGNPSTGSQCGLNSRTAGEGLKKQRMADSEEREEGLTLPALLNSRTDAIDETIEMIAKENRVSPKEIEEAYFIIKEPGSRVEEAESMVTLRAEVANLKAMLQAERHRANEFERKYIATLKINAEGCRRLKENERMVRQLQDCISRMIHGLSNQITEMKMIMCTPPRPDASSSIPNRVPTDATSSCSYSSSEDFTFPVPRSDNDREGGFSDYF 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9335875 9357303 + Carg11498-RA Car17g01227 165599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01227 1103 MobiDBLite consensus disorder prediction 1059 1087 - -
Car17g01227 1103 ProSiteProfiles Myosin motor domain profile. 122 772 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car17g01227 1103 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 68 117 IPR004009 GO:0003774|GO:0005524|GO:0016459
Car17g01227 1103 ProSiteProfiles IQ motif profile. 775 804 IPR000048 GO:0005515
Car17g01227 1103 MobiDBLite consensus disorder prediction 897 925 - -
Car17g01227 1103 Pfam IQ calmodulin-binding motif 874 887 IPR000048 GO:0005515
Car17g01227 1103 Pfam IQ calmodulin-binding motif 799 818 IPR000048 GO:0005515
Car17g01227 1103 Pfam IQ calmodulin-binding motif 849 867 IPR000048 GO:0005515
Car17g01227 1103 MobiDBLite consensus disorder prediction 1057 1103 - -
Car17g01227 1103 ProSiteProfiles IQ motif profile. 846 875 IPR000048 GO:0005515
Car17g01227 1103 Pfam Myosin head (motor domain) 125 559 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car17g01227 1103 Pfam Myosin head (motor domain) 603 760 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car17g01227 1103 Coils Coil 978 1005 - -
Car17g01227 1103 MobiDBLite consensus disorder prediction 1088 1103 - -
Car17g01227 1103 ProSiteProfiles IQ motif profile. 798 827 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01227 Car-Chr17:9335875 Car11g00596 Car-Chr11:3231929 0 dispersed
Car17g01227 Car-Chr17:9335875 Car08g00246 Car-Chr8:1546369 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01227 K10357 - mnt:21393089 1240.71