Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01230 ATGGATTCGGCGAGGAGTTGGTTCAATAAGCTTCAGCCGAGAGATAGGCCGAGAGGTTCTTCGAAGAAGAAGGACGATAGTATGGAAGGGAACGAGGATTGTACTGATAAAATGGACGAAGAAGCGCATTCGAACAGCACTAAGCAGAAGGCTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAAAGGAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTCAAGTATCTAGAGAAGAAGGAAACTGAATATATGCGCCTCAAAAGGCACAAAATGGGTGTCAGTGACTTTGATTTACTAACAATTATCGGCAAAGGTGCTTTTGGGGAGGTTCGTGTATGTAGAGAGAAGACTTCAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGTATCGTGAAACTCTATTGTTCTTTTCAAGATGACGAGTTTCTTTATCTCATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGATGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTGTTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCGGACTTTGGACTGTGCAAACCATTAGATTGCAGTAAACTCAAAGAACAAGATCTTGATATAGGGAGTGTCCGTAATGAAGCTGGACAAAGTGATGAGCGTAATGCAGCTCCCCGTACTCAACAAGAGCAACTCCAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCGGAGGTTTTGTTGAAGAAAGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGGTGTTCCCTGATGAAGCAAAGCTATCTCCCTTGGCAAAAGATCTTATCAGCAAACTACTATGCAATGTTGACGAGAGGCTAGGTACAAATGGCGCGGATGACATTAAGGTTCATCCGTGGTTTGAAGGTATTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTGTGACCTGCAAAGCAGTTCTTCATCTAAATCTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTCGTTGGATATACTTACAAGAACTTCGAAATTGTCAATGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAAAAAAGCGGCAAA 1512 41.07 MDSARSWFNKLQPRDRPRGSSKKKDDSMEGNEDCTDKMDEEAHSNSTKQKAAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKYLEKKETEYMRLKRHKMGVSDFDLLTIIGKGAFGEVRVCREKTSGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAVESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSKLKEQDLDIGSVRNEAGQSDERNAAPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLVFPDEAKLSPLAKDLISKLLCNVDERLGTNGADDIKVHPWFEGIEWDRLYEMEAAFVPEVKDELDTQNFEKFEECDLQSSSSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKSGK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9367910 9374337 - Carg11501-RA Car17g01230 165602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01230 504 MobiDBLite consensus disorder prediction 284 304 - -
Car17g01230 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Car17g01230 504 MobiDBLite consensus disorder prediction 9 46 - -
Car17g01230 504 Coils Coil 62 82 - -
Car17g01230 504 MobiDBLite consensus disorder prediction 1 55 - -
Car17g01230 504 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car17g01230 504 Pfam Protein kinase domain 122 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g01230 504 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Car17g01230 504 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car17g01230 504 MobiDBLite consensus disorder prediction 287 304 - -
Car17g01230 504 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00953 Car-Chr8:6369726 Car17g01230 Car-Chr17:9367910 0 dispersed
Car17g00140 Car-Chr17:866008 Car17g01230 Car-Chr17:9367910 0 dispersed
Car17g01230 Car-Chr17:9367910 Car08g00254 Car-Chr8:1605341 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89492 PF00069 Pkinase 4.30E-62 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01230 K08790 - csv:101221720 932.169