Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01273 ATGCTGTTGATTGTTGGACCTGCTGGCGGAGCAGAGAGTTTGACTCGGAGAGGGGTTCGGATTGGATGGACAGGAAAGCTTATGCGGTCGAGTCTAGGCGACTCCGCTCACATATTCTCTCCTCTTGAAGAGAAGATTGGAATGACTATGAAGTGGGAAACAGTGCAGCTGTTAAGGTGGGATATGAACCATCCTAGTCTGGAGAAACGGCCGGAGCCTGGAAATGCGATTGCTGGCTTTCCTGGTCTCTATGGACGGAGTGGAGGTCGTTCTAAGATAGGTTGGATTTATGGTTCGGTCACTGAGGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCACAGAGACCAGCTTTTAAGGGATCGGCTCCGATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCACTGGGTTCTGTTGAAATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTCGAGAGGCTTGCCTACATCAACACCATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTTTGTCTTCTCACTGGAAAATTCATTATCCCCACCTTGACGAACTTAGCTAGTGTCTGGTTCATGGCCCTGTTTCTTTCCATCATTGCTACGGCTGTACTGGAGCTTCGATGGAGTGAAGTGAGTATCGAGGACTTGTGGCGTAATGAGCAATTTTGGGTGATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGTGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCCGACGACACCGAGTTTGGAGAACTCTATCTTTTCAAGTGGACAACCCTCCTTATCCCGCCCACCACTCTCATAATCTTGAACATGGTGGGAGTAGTTGCTGGAGTTTCAGATGCAATAAACAATGGCTACGGTTCATGGGGTCCTCTATTTGGAAAGCTATTTTTTGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACGCCCACAATTGTAGTCCTTTGGTCCGTGCTTCTTGCATCCATTTTCTCACTGGTTTGGGTGCGAATTGATCCCTTCCTGCCCAAGCAAACTGGTCCAGTCCTCAAACAATGTGGAGTCGAT 1203 47.71 MLLIVGPAGGAESLTRRGVRIGWTGKLMRSSLGDSAHIFSPLEEKIGMTMKWETVQLLRWDMNHPSLEKRPEPGNAIAGFPGLYGRSGGRSKIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFLSIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVD 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9663661 9666750 + Carg11544-RA Car17g01273 165645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01273 401 Pfam Cellulose synthase 91 395 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01273 Car-Chr17:9663661 Car13g00472 Car-Chr13:7010740 0 dispersed
Car17g01273 Car-Chr17:9663661 Car02g00866 Car-Chr2:6208790 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01273 K10999 - csv:101205733 628.246