Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01306 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTAAATCCTGAAAGGGAAAGCGATGATGGTCAGCAAGACCATCCAATGGTTCCACCGAACATTGCGAAATTACCTTCTGGCACAGACAAACTTGGATCCAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCCAAGGATGCTCCTCTCGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAGCTTGCTATTGCAACAAAGAACTTTAGACCCGAATGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGGGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTTGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCCGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGAGGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTCGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGGACTTATGGTTACTGTGCTCCTGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTCGGTGTTGTGTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGTGAACAGAACCTCGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCGAAACTGGCCGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGCCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAAGCTGCAGCCCGTCCACTCATTGGAGATGTGGTCACTGCCCTGTCTTATTTAGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACAGCTGCTGCTCAGAGAGGTTCTGGTGATCGGGACGAAAGACCGAACAGTGGCGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCTTCTGGACGAAGGTGGGCACTGGATGGTCCGGAGAAGGACGACTCCCCCAGGGAGACTGCAAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCGGTCGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACGCAAGGCAGTTTTGATGGGTCTAATGGATAA 1401 47.68 MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSGTDKLGSKSNGGSKREQQIPKDAPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAQRGSGDRDERPNSGEKGGGVVKNEEGGASGRRWALDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9830000 9834362 - Carg11579-RA Car17g01306 165678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01306 466 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Car17g01306 466 MobiDBLite consensus disorder prediction 442 466 - -
Car17g01306 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Car17g01306 466 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g01306 466 MobiDBLite consensus disorder prediction 7 26 - -
Car17g01306 466 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g01306 466 MobiDBLite consensus disorder prediction 442 457 - -
Car17g01306 466 MobiDBLite consensus disorder prediction 1 61 - -
Car17g01306 466 MobiDBLite consensus disorder prediction 366 429 - -
Car17g01306 466 MobiDBLite consensus disorder prediction 412 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01271 Car-Chr6:9107178 Car17g01306 Car-Chr17:9830000 0 dispersed
Car14g00853 Car-Chr14:5024085 Car17g01306 Car-Chr17:9830000 1.86E-104 dispersed
Car14g01463 Car-Chr14:12216354 Car17g01306 Car-Chr17:9830000 0 dispersed
Car16g00846 Car-Chr16:6187289 Car17g01306 Car-Chr17:9830000 3.90E-177 dispersed
Car17g01171 Car-Chr17:8994756 Car17g01306 Car-Chr17:9830000 1.74E-171 dispersed
Car17g01306 Car-Chr17:9830000 Car08g00002 Car-Chr8:8045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89495 PF00069 Pkinase 4.40E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01306 K13430 - csv:101219880 897.886