Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g01306 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTAAATCCTGAAAGGGAAAGCGATGATGGTCAGCAAGACCATCCAATGGTTCCACCGAACATTGCGAAATTACCTTCTGGCACAGACAAACTTGGATCCAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCCAAGGATGCTCCTCTCGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAGCTTGCTATTGCAACAAAGAACTTTAGACCCGAATGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGGGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTTGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCCGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGAGGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTCGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGGACTTATGGTTACTGTGCTCCTGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTCGGTGTTGTGTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGTGAACAGAACCTCGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCGAAACTGGCCGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGCCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAAGCTGCAGCCCGTCCACTCATTGGAGATGTGGTCACTGCCCTGTCTTATTTAGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACAGCTGCTGCTCAGAGAGGTTCTGGTGATCGGGACGAAAGACCGAACAGTGGCGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCTTCTGGACGAAGGTGGGCACTGGATGGTCCGGAGAAGGACGACTCCCCCAGGGAGACTGCAAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCGGTCGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACGCAAGGCAGTTTTGATGGGTCTAATGGATAA | 1401 | 47.68 | MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSGTDKLGSKSNGGSKREQQIPKDAPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAQRGSGDRDERPNSGEKGGGVVKNEEGGASGRRWALDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9830000 | 9834362 | - | Carg11579-RA | Car17g01306 | 165678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g01306 | 466 | ProSitePatterns | Protein kinases ATP-binding region signature. | 91 | 114 | IPR017441 | GO:0005524 | |
Car17g01306 | 466 | MobiDBLite | consensus disorder prediction | 442 | 466 | - | - | |
Car17g01306 | 466 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672|GO:0006468 | |
Car17g01306 | 466 | Pfam | Protein kinase domain | 90 | 295 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car17g01306 | 466 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
Car17g01306 | 466 | ProSiteProfiles | Protein kinase domain profile. | 85 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car17g01306 | 466 | MobiDBLite | consensus disorder prediction | 442 | 457 | - | - | |
Car17g01306 | 466 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Car17g01306 | 466 | MobiDBLite | consensus disorder prediction | 366 | 429 | - | - | |
Car17g01306 | 466 | MobiDBLite | consensus disorder prediction | 412 | 429 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g01271 | Car-Chr6:9107178 | Car17g01306 | Car-Chr17:9830000 | 0 | dispersed | |
Car14g00853 | Car-Chr14:5024085 | Car17g01306 | Car-Chr17:9830000 | 1.86E-104 | dispersed | |
Car14g01463 | Car-Chr14:12216354 | Car17g01306 | Car-Chr17:9830000 | 0 | dispersed | |
Car16g00846 | Car-Chr16:6187289 | Car17g01306 | Car-Chr17:9830000 | 3.90E-177 | dispersed | |
Car17g01171 | Car-Chr17:8994756 | Car17g01306 | Car-Chr17:9830000 | 1.74E-171 | dispersed | |
Car17g01306 | Car-Chr17:9830000 | Car08g00002 | Car-Chr8:8045 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89495 | PF00069 | Pkinase | 4.40E-45 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g01306 | K13430 | - | csv:101219880 | 897.886 |