Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01312 ATGGCAGACCACAACAACAAGAAGCCATCAGCAGCAGCAGCAACAGCAGCAGCAGCGCCACCACCACCATCATCACCCGCTCCAACACCACCATCCTCGGATATCATAATTGCAAACCCAAACAAAGATCAAAACAAGAAGCACCAACAACAATTGGCTCCTAAGCGTACTTCCAATAAAGACCGCCACAAGAAAGTGGATGGCCGTGGCCGTAGGATCCGCATGCCTGCCCTCTGCGCCGCCCGTGTCTTCCAATTGACCCGCGAATTAGGCCATAAGACCGACGGCGAGACCATCCAGTGGCTCCTCCAGCAAGCTGAGCCCTCCATCATCGCCGCCACTGGCTCCGGTACCATCCCTGCATCTGCCCTCCATGCGGCCGGCGTCTCCCTCTCGGACCCCGACACCTCCGTCTCTGTGTCCGCCACCCTGACCCCCAAAATTGACGCCGTCCCAAGACTGAATTGGGCGATGATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCGTATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGCCATTGGAGCAGGACCAAGCTCCAGATAAAGACAAGTCTCAAGAATCGAGATGA 849 56.07 MADHNNKKPSAAAATAAAAPPPPSSPAPTPPSSDIIIANPNKDQNKKHQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDPDTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAPLEQDQAPDKDKSQESR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9868075 9868923 - Carg11585-RA Car17g01312 165684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01312 282 MobiDBLite consensus disorder prediction 1 72 - -
Car17g01312 282 MobiDBLite consensus disorder prediction 48 64 - -
Car17g01312 282 Pfam TCP family transcription factor 57 139 IPR017887 -
Car17g01312 282 MobiDBLite consensus disorder prediction 31 47 - -
Car17g01312 282 ProSiteProfiles TCP domain profile. 59 113 IPR017887 -
Car17g01312 282 MobiDBLite consensus disorder prediction 254 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00666 Car-Chr14:3690759 Car17g01312 Car-Chr17:9868075 2.93E-69 dispersed
Car17g01312 Car-Chr17:9868075 Car10g00176 Car-Chr10:839601 1.03E-37 dispersed
Car02g00653 Car-Chr2:4910139 Car17g01312 Car-Chr17:9868075 3.04E-29 transposed
Car12g00219 Car-Chr12:1440937 Car17g01312 Car-Chr17:9868075 5.92E-148 transposed
Car11g01298 Car-Chr11:10753075 Car17g01312 Car-Chr17:9868075 2.39E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5110 PF03634 TCP 4.50E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01312 - - cmos:111456629 521.161