Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01312 ATGGCAGACCACAACAACAAGAAGCCATCAGCAGCAGCAGCAACAGCAGCAGCAGCGCCACCACCACCATCATCACCCGCTCCAACACCACCATCCTCGGATATCATAATTGCAAACCCAAACAAAGATCAAAACAAGAAGCACCAACAACAATTGGCTCCTAAGCGTACTTCCAATAAAGACCGCCACAAGAAAGTGGATGGCCGTGGCCGTAGGATCCGCATGCCTGCCCTCTGCGCCGCCCGTGTCTTCCAATTGACCCGCGAATTAGGCCATAAGACCGACGGCGAGACCATCCAGTGGCTCCTCCAGCAAGCTGAGCCCTCCATCATCGCCGCCACTGGCTCCGGTACCATCCCTGCATCTGCCCTCCATGCGGCCGGCGTCTCCCTCTCGGACCCCGACACCTCCGTCTCTGTGTCCGCCACCCTGACCCCCAAAATTGACGCCGTCCCAAGACTGAATTGGGCGATGATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCGTATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGCCATTGGAGCAGGACCAAGCTCCAGATAAAGACAAGTCTCAAGAATCGAGATGA 849 56.07 MADHNNKKPSAAAATAAAAPPPPSSPAPTPPSSDIIIANPNKDQNKKHQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDPDTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAPLEQDQAPDKDKSQESR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9868075 9868923 - Carg11585-RA Car17g01312 165684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01312 282 MobiDBLite consensus disorder prediction 1 72 - -
Car17g01312 282 MobiDBLite consensus disorder prediction 48 64 - -
Car17g01312 282 Pfam TCP family transcription factor 57 139 IPR017887 -
Car17g01312 282 MobiDBLite consensus disorder prediction 31 47 - -
Car17g01312 282 ProSiteProfiles TCP domain profile. 59 113 IPR017887 -
Car17g01312 282 MobiDBLite consensus disorder prediction 254 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01312 - - - cmos:111456629 521.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00666 Car-Chr14:3690759 Car17g01312 Car-Chr17:9868075 2.93E-69 dispersed
Car17g01312 Car-Chr17:9868075 Car10g00176 Car-Chr10:839601 1.03E-37 dispersed
Car02g00653 Car-Chr2:4910139 Car17g01312 Car-Chr17:9868075 3.04E-29 transposed
Car12g00219 Car-Chr12:1440937 Car17g01312 Car-Chr17:9868075 5.92E-148 transposed
Car11g01298 Car-Chr11:10753075 Car17g01312 Car-Chr17:9868075 2.39E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00738 . 31 253 TCP Transcription Factor Family AT5G23280 63.5 1.8e-65 246.5
Car04g02171 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 2.6e-64 242.7
Car04g01351 . 36 250 TCP Transcription Factor Family AT5G23280 61.4 9.7e-64 240.7
Car18g00741 . 33 230 TCP Transcription Factor Family AT5G23280 58.5 9.4e-59 224.2
Car17g00004 . 65 337 TCP Transcription Factor Family AT2G45680 52.2 7.9e-59 224.9
Car18g01068 CCT,ECH 58 148 TCP Transcription Factor Family AT3G47620 92.3 4.5e-41 166.4
Car04g01690 CCT,ECH 62 156 TCP Transcription Factor Family AT3G47620 88.7 5.0e-40 162.9
Car13g00957 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.3e-39 160.2
Car04g01863 . 140 222 TCP Transcription Factor Family AT3G47620 90.4 1.5e-36 151.4
Car04g01863 . 140 232 TCP Transcription Factor Family AT1G69690 82.8 1.7e-36 150.6
Car14g00666 . 1 319 TCP Transcription Factor Family AT3G27010 57.1 5.7e-61 231.9
Car11g01298 . 38 276 TCP Transcription Factor Family AT3G27010 56.7 6.7e-54 208.4
Car17g01312 . 42 259 TCP Transcription Factor Family AT3G27010 53.2 5.5e-48 188.7
Car15g00738 . 1 252 TCP Transcription Factor Family AT5G08330 60.9 2.4e-64 242.7
Car04g02171 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 7.9e-63 237.7
Car04g01351 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 1.3e-60 230.3
Car18g00741 . 10 228 TCP Transcription Factor Family AT5G08330 57.4 3.7e-60 228.8
Car11g00191 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 58.0 4.1e-39 159.5
Car20g00876 . 39 150 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012904 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5110 PF03634 TCP 4.50E-30 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g01312 Car_Chr17 FPKM 0.977212 0.699117 37.930618 40.462887 20.284117 17.948942 20.183363 16.207018 17.77174 19.483801