Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car17g01323 | ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCCTGGATCGTTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCGCCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGCTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTTTGGTCTCGGACGGTAGCAGCCATGCCAACAGCCGGTGCTATAGTTCCCCAATGCCAACAAGATAG | 957 | 47.02 | MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLPGSLACDYKEKQLAISCIPIGLLPKSSDARPFLDVESSNGENVQKVLGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGLVSDGSSHANSRCYSSPMPTR | 318 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 9901582 | 9904402 | + | Carg11596-RA | Car17g01323 | 165695 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car17g01323 | 318 | MobiDBLite | consensus disorder prediction | 296 | 318 | - | - | |
| Car17g01323 | 318 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677 | |
| Car17g01323 | 318 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677 | |
| Car17g01323 | 318 | MobiDBLite | consensus disorder prediction | 293 | 318 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car11g00025 | Car-Chr11:111811 | Car17g01323 | Car-Chr17:9901582 | 5.74E-51 | dispersed | |
| Car13g00660 | Car-Chr13:8113900 | Car17g01323 | Car-Chr17:9901582 | 7.34E-54 | dispersed | |
| Car14g00662 | Car-Chr14:3658014 | Car17g01323 | Car-Chr17:9901582 | 3.39E-47 | dispersed | |
| Car17g01323 | Car-Chr17:9901582 | Car18g00237 | Car-Chr18:1353627 | 5.93E-48 | dispersed | |
| Car18g00018 | Car-Chr18:83663 | Car17g01323 | Car-Chr17:9901582 | 1.12E-36 | dispersed | |
| Car10g00040 | Car-Chr10:176209 | Car17g01323 | Car-Chr17:9901582 | 2.71E-48 | wgd | |
| Car11g01303 | Car-Chr11:10804091 | Car17g01323 | Car-Chr17:9901582 | 3.78E-49 | wgd | |
| Car17g01323 | Car-Chr17:9901582 | Car08g00154 | Car-Chr8:927995 | 1.52E-150 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5111 | PF03110 | SBP | 7.00E-29 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car17g01323 | - | - | cpep:111787814 | 605.905 |