Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01323 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCCTGGATCGTTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCGCCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGCTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTTTGGTCTCGGACGGTAGCAGCCATGCCAACAGCCGGTGCTATAGTTCCCCAATGCCAACAAGATAG 957 47.02 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLPGSLACDYKEKQLAISCIPIGLLPKSSDARPFLDVESSNGENVQKVLGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGLVSDGSSHANSRCYSSPMPTR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9901582 9904402 + Carg11596-RA Car17g01323 165695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01323 318 MobiDBLite consensus disorder prediction 296 318 - -
Car17g01323 318 Pfam SBP domain 50 123 IPR004333 GO:0003677
Car17g01323 318 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Car17g01323 318 MobiDBLite consensus disorder prediction 293 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01323 - - - cpep:111787814 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00025 Car-Chr11:111811 Car17g01323 Car-Chr17:9901582 5.74E-51 dispersed
Car13g00660 Car-Chr13:8113900 Car17g01323 Car-Chr17:9901582 7.34E-54 dispersed
Car14g00662 Car-Chr14:3658014 Car17g01323 Car-Chr17:9901582 3.39E-47 dispersed
Car17g01323 Car-Chr17:9901582 Car18g00237 Car-Chr18:1353627 5.93E-48 dispersed
Car18g00018 Car-Chr18:83663 Car17g01323 Car-Chr17:9901582 1.12E-36 dispersed
Car10g00040 Car-Chr10:176209 Car17g01323 Car-Chr17:9901582 2.71E-48 wgd
Car11g01303 Car-Chr11:10804091 Car17g01323 Car-Chr17:9901582 3.78E-49 wgd
Car17g01323 Car-Chr17:9901582 Car08g00154 Car-Chr8:927995 1.52E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00872 CST 181 1002 SBP-box Gene Family AT2G47070 55.7 2.1e-239 825.9
Car01g00236 CST 179 1005 SBP-box Gene Family AT2G47070 53.3 2.5e-224 775.8
Car14g00872 CST 25 1002 SBP-box Gene Family AT3G60030 54.3 3.5e-276 948.3
Car01g00236 CST 26 1005 SBP-box Gene Family AT3G60030 52.9 1.2e-260 896.7
Car18g00237 . 64 181 SBP-box Gene Family AT5G50570 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50570 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Car14g01485 CST 19 344 SBP-box Gene Family AT5G18830 51.3 2.6e-81 300.8
Car14g00872 CST 181 1002 SBP-box Gene Family AT2G47070 55.7 2.1e-239 825.9
Car01g00236 CST 179 1005 SBP-box Gene Family AT2G47070 53.3 2.5e-224 775.8
Car14g01485 CST 19 344 SBP-box Gene Family AT5G18830 51.3 2.6e-81 300.8
Car14g00872 CST 25 1002 SBP-box Gene Family AT3G60030 54.3 3.5e-276 948.3
Car01g00236 CST 26 1005 SBP-box Gene Family AT3G60030 52.9 1.2e-260 896.7
Car18g00237 . 64 181 SBP-box Gene Family AT5G50570 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50570 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Car18g00237 . 64 181 SBP-box Gene Family AT5G50670 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50670 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5111 PF03110 SBP 7.00E-29 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g01323 Car_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.396654 0.0 0.0