Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01328 ATGATGAACGACGGATATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGGCTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCTCACGAACGACTTAAGGTTGGAAATGCCGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGGCGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTTGGAATATCAACATTCATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGGGTCAAATGGCGTGGATAGGCGGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATAACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATGGGGTGATGCACTTGATTCAAGTAAGACAACCGTTCTTGAGTCCCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACAATGAGCATCGCAACTGGCTGGACAGCGGAGGAATAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACATATCATTCCTTAAACAAGACCATGGAAATTCTCTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAAAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGTTGCTTTCTCAAATGGACTATTGCGAGGTTGAGGCTAATGCAATTGTGATCATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTCGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAAGGTGTTATACACATGATTTCCGGTTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGCGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGCAGAATCGACTTGTCTCAGCGATGGTTTCTGA 2895 43.01 MMNDGYDVSDLYREAQTRWLKPPEVLFILQNHEKYQLAEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGAESVPQLSPASASSSGSYPSQNHALEYQHSLSPGSVEVSSETGNRTIGSNGVDRRYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHNRYDMAHEFIFGGEGTRPWGDALDSSKTTVLESQDRHSLLWNENENPSSSSTVDNEHRNWLDSGGITFPMLGSCTSPEYASPLDTHDDNSNYHISFLKQDHGNSLEVDTSLIVAQVQKFTIRQIVPEQGYATESTKLLSQMDYCEVEANAIVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKARDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGCSLSKKEQGVIHMISGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESAESTCLSDGF 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9946059 9961776 + Carg11601-RA Car17g01328 165700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01328 964 ProSiteProfiles IQ motif profile. 838 862 IPR000048 GO:0005515
Car17g01328 964 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Car17g01328 964 MobiDBLite consensus disorder prediction 133 185 - -
Car17g01328 964 ProSiteProfiles IQ motif profile. 815 844 IPR000048 GO:0005515
Car17g01328 964 Pfam Ankyrin repeats (3 copies) 622 699 IPR002110 GO:0005515
Car17g01328 964 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Car17g01328 964 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Car17g01328 964 MobiDBLite consensus disorder prediction 135 183 - -
Car17g01328 964 Pfam IQ calmodulin-binding motif 817 835 IPR000048 GO:0005515
Car17g01328 964 Pfam IQ calmodulin-binding motif 840 859 IPR000048 GO:0005515
Car17g01328 964 ProSiteProfiles IQ motif profile. 758 786 IPR000048 GO:0005515
Car17g01328 964 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01328 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1602.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00331 Car-Chr17:2072407 Car17g01328 Car-Chr17:9946059 6.31E-120 dispersed
Car17g01328 Car-Chr17:9946059 Car19g00205 Car-Chr19:1981956 4.05E-46 dispersed
Car17g01328 Car-Chr17:9946059 Car08g00162 Car-Chr8:983394 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5113 PF03859 CG-1 3.80E-48 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g01328 Car_Chr17 FPKM 19.168116 14.445715 14.493022 14.72087 15.221071 9.383389 13.354827 15.321358 12.54386 13.466314