Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g01328 ATGATGAACGACGGATATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGGCTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCTCACGAACGACTTAAGGTTGGAAATGCCGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCGTGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGGCGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTAGTTCTGGTTCCTATCCGTCCCAAAATCATGCTTTGGAATATCAACATTCATTGAGCCCAGGGTCTGTTGAAGTTAGTTCTGAAACTGGCAACCGTACTATTGGGTCAAATGGCGTGGATAGGCGGTATGAAATATCAGAACTAAAGAGTTCAAACGATCGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATATTATGGTCACGAGGAAGGTTCAAATTTTAACCTTATAGACTACTATGAGATGTCCATTGAGGATCAGTTTTCAGTACTTCAGCATCCAGAGAATGCTGTCCATGATAATAGTTATACGTCATTTGAGATGCAAGATGCTAGTGGTAAACATAACCGTTATGATATGGCACATGAGTTTATATTTGGTGGTGAAGGAACTCGACCATGGGGTGATGCACTTGATTCAAGTAAGACAACCGTTCTTGAGTCCCAAGATAGGCATTCTCTCCTATGGAATGAAAATGAAAATCCATCATCATCTTCAACCGTAGACAATGAGCATCGCAACTGGCTGGACAGCGGAGGAATAACTTTTCCTATGCTAGGAAGCTGCACATCTCCAGAATATGCTTCACCACTAGACACTCATGATGATAATTCCAACTACCACATATCATTCCTTAAACAAGACCATGGAAATTCTCTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAAAAATTTACAATCCGCCAAATAGTACCTGAACAGGGTTATGCCACTGAGAGTACCAAGTTGCTTTCTCAAATGGACTATTGCGAGGTTGAGGCTAATGCAATTGTGATCATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTCGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAAGGTGTTATACACATGATTTCCGGTTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGCGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGAGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGCAGAATCGACTTGTCTCAGCGATGGTTTCTGA 2895 43.01 MMNDGYDVSDLYREAQTRWLKPPEVLFILQNHEKYQLAEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGAESVPQLSPASASSSGSYPSQNHALEYQHSLSPGSVEVSSETGNRTIGSNGVDRRYEISELKSSNDREVSQALRRIEEQLSLNEDSLKDIGPYYGHEEGSNFNLIDYYEMSIEDQFSVLQHPENAVHDNSYTSFEMQDASGKHNRYDMAHEFIFGGEGTRPWGDALDSSKTTVLESQDRHSLLWNENENPSSSSTVDNEHRNWLDSGGITFPMLGSCTSPEYASPLDTHDDNSNYHISFLKQDHGNSLEVDTSLIVAQVQKFTIRQIVPEQGYATESTKLLSQMDYCEVEANAIVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKARDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGCSLSKKEQGVIHMISGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAKLDGTGNESAESTCLSDGF 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9946059 9961776 + Carg11601-RA Car17g01328 165700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g01328 964 ProSiteProfiles IQ motif profile. 838 862 IPR000048 GO:0005515
Car17g01328 964 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Car17g01328 964 MobiDBLite consensus disorder prediction 133 185 - -
Car17g01328 964 ProSiteProfiles IQ motif profile. 815 844 IPR000048 GO:0005515
Car17g01328 964 Pfam Ankyrin repeats (3 copies) 622 699 IPR002110 GO:0005515
Car17g01328 964 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Car17g01328 964 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Car17g01328 964 MobiDBLite consensus disorder prediction 135 183 - -
Car17g01328 964 Pfam IQ calmodulin-binding motif 817 835 IPR000048 GO:0005515
Car17g01328 964 Pfam IQ calmodulin-binding motif 840 859 IPR000048 GO:0005515
Car17g01328 964 ProSiteProfiles IQ motif profile. 758 786 IPR000048 GO:0005515
Car17g01328 964 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00331 Car-Chr17:2072407 Car17g01328 Car-Chr17:9946059 6.31E-120 dispersed
Car17g01328 Car-Chr17:9946059 Car19g00205 Car-Chr19:1981956 4.05E-46 dispersed
Car17g01328 Car-Chr17:9946059 Car08g00162 Car-Chr8:983394 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5113 PF03859 CG-1 3.80E-48 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g01328 K21596 - csv:101222798 1602.8