Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00007 ATGAGGGGCATGGGAAGCCAGAGAGTTCCGCTGCTTGATCGTGGGAATTACTTCCTCTGGTTTCTGTTATGGGATTTTACAGTGCTTCGGCTGTGCTTGCTTTTAGTTTCAAGGGGAGGGCGAAAGGGCCTTGGCACATCAGAAGATCGTCAGTTAACAGACCTGGAACATGGGGATGCTGTACCGCCTGCAAATGTGGGATTTGGCAGAGTACTTTCACTTGCAAAGCCTGAAGTGGGGAAATTGATAATTGCTACCATTGCTCTTCTGATTGCTTCCACGTCAAGTTTATTGATACCGAAATTTGGGGGAAAGATCATTGACATTGTATCTGGAGATATTGACACACCTGAACAGAAAAGCAAAGCTCTAAAGGAAGTCACAAACACCATTGTATACATCACATCGATCGTCTTAGTTGGTTCGGTGTGCTCAGCTATTCGAGCTTGGTTATTTTCTTCTGCTAGTGAGAGGGTTGTTGCTCGCTTAAGGAAGAATCTGTTCACTCATCTTCTTAATCAGGAAATAGCCTTCTTTGACATTACTCGAACAGGAGAACTTCTTAGTAGGCTATCTGAGGATACCCAAATCATTAAGAGTGCCGCAACTACCAATCTTTCCGAGGCCCTAAGAAATCTATCAACTGCATTAATTGGGCTGACCTTCATGTTTTCAACTTCTTGGAAGTTGACATTATTGGCTTTGGTTGTTGTTCCTGTCATTTCTGTGGCTGTTCGTAAATTTGGTCGCTATCTTCGTGAGCTTTCTCACAAGACACAAGCAGCTGCTGCTGTCTGTGCTTCAATTGCTGAGGAATCTTTTGGTGCCATACGCACTGTCAGATCTTTTGCTCAAGAATCGTACGAGATATCCCGGTACTCTCAGAAAGTCGAGGAGACATTGGAACTTGGACTCAAACAAGCTAAAGTGGTTGGATTGTTTTCTGGAGGTCTCTATGCAGCATCGACCTTATCTGTTATTATTGTTGTGATATATGGAGCTAATTTGACGATCAAAGGGTTCATGACTCCGGGAGCTCTGACATCTTTCATTCTTTATAGTTTAACAGTGGGAACCTCTGTATCTGGGTTGTCGGGATTATACACTGTGGCCATGAAAGCTGCTGGAGCTAGCAGGCGAGTTTTTCAGCTCCTGGATCGTGTATCAACAATGACAAATTCAGGAAATAAGTGTCCTATTGGTGATGAAGATGGAGAAGTTGAGTTGGACGATGTCTGGTTTGCATATCCTTCCCGCCCTAATCACACTGTGCTGAAGGGAATAACATTGAGATTGCAGCCTGGCTCAAAAGTAGCTCTCGTTGGTCCAAGTGGCGGTGGAAAAACCACCATAGCAAACCTGATTGAAAGATTCTATGATCCTAATAAAGGCCAGATTCTGATAAATGGGGTTCCTCTGGCAGAGATATCCCATGAACATTTGCACAAAAGGATCAGTATTGTCAGCCAGGAGCCTATTCTTTTCAACTGCTCCATAGAGGAGAATATAGCCTACGGTTTAGATGGCAAAGTTGATAGCATCGATGTAGAAAATGCTGCTAAAATGGCCAATGCCCACGATTTCATATCAAACTTTCCTGAAAAGTATAAAACCCATGTTGGCGAACGTGGAGTAAGGCTGTCGGGCGGTCAGAAACAAAGAGTAGCTATAGCAAGAGCTCTTCTTATGAATCCAAGAATTCTCCTTTTGGATGAAGCCACAAGTGCTCTAGATGCTGAAAGTGAACACTTAGTACAGGATGCAATGGACTCTTTGATGAAAGGCAGGACCGTGCTCGTCATTGCGCATAGGCTATCCACCGTTAAGACAGCAGACACGGTGGCCGTTGTTTCTGGTGGTCAGATTGTTGAAAGCGGAACACACGAAGAGCTCCTTAGCAGGGATGGTGTCTACACTGCACTAGTGAGGAGGCAACTGCAAGATACAAAAACAACATAA 1959 44.21 MRGMGSQRVPLLDRGNYFLWFLLWDFTVLRLCLLLVSRGGRKGLGTSEDRQLTDLEHGDAVPPANVGFGRVLSLAKPEVGKLIIATIALLIASTSSLLIPKFGGKIIDIVSGDIDTPEQKSKALKEVTNTIVYITSIVLVGSVCSAIRAWLFSSASERVVARLRKNLFTHLLNQEIAFFDITRTGELLSRLSEDTQIIKSAATTNLSEALRNLSTALIGLTFMFSTSWKLTLLALVVVPVISVAVRKFGRYLRELSHKTQAAAAVCASIAEESFGAIRTVRSFAQESYEISRYSQKVEETLELGLKQAKVVGLFSGGLYAASTLSVIIVVIYGANLTIKGFMTPGALTSFILYSLTVGTSVSGLSGLYTVAMKAAGASRRVFQLLDRVSTMTNSGNKCPIGDEDGEVELDDVWFAYPSRPNHTVLKGITLRLQPGSKVALVGPSGGGKTTIANLIERFYDPNKGQILINGVPLAEISHEHLHKRISIVSQEPILFNCSIEENIAYGLDGKVDSIDVENAAKMANAHDFISNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVVSGGQIVESGTHEELLSRDGVYTALVRRQLQDTKTT 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27729 32509 + Carg22779-RA Car18g00007 165709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00007 652 Pfam ABC transporter 425 575 IPR003439 GO:0005524
Car18g00007 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 644 IPR003439 GO:0005524
Car18g00007 652 Pfam ABC transporter transmembrane region 82 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car18g00007 652 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 373 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car18g00007 652 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524
Car18g00007 652 SMART AAA_5 434 627 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00007 - - - csv:101206026 1102.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00007 Car-Chr18:27729 Car04g02658 Car-Chr4:20709554 3.45E-100 dispersed
Car20g00261 Car-Chr20:1508312 Car18g00007 Car-Chr18:27729 1.56E-67 dispersed
Car02g00773 Car-Chr2:5631802 Car18g00007 Car-Chr18:27729 2.58E-32 transposed
Car18g00704 Car-Chr18:8252829 Car18g00007 Car-Chr18:27729 1.52E-111 transposed
Car14g00291 Car-Chr14:1388539 Car18g00007 Car-Chr18:27729 1.62E-63 transposed
Car13g00901 Car-Chr13:9375614 Car18g00007 Car-Chr18:27729 5.47E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00007 Car_Chr18 FPKM 10.855716 10.09567 21.262346 20.550007 14.803511 14.184535 15.094386 8.12542 8.057044 8.149455