Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00016 ATGGGACGAGGGCGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAAAGAAGGTCCGGTTTGCTGAAGAAAGCCCATGAGATTTCAGTTCTTTGTGATGCCGAAGTTGCTCTTATTGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCATGCATGGAGAAAATCCTGGAACGCTATGAAAGGTACTCCTATGCAGAAAGGAGACTTATTGCAAATGATAACCAATCAAATGGAAATTGGAGTCTTGAACATGCAAAGCTCAAAGCCAGGGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCCTTGGCTCTAAAAGAGCTTCAAAATATTGAACAACAACTTGATTCTGCACTCAAACAAATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTACAGGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGCACAAGCTCAAAATCCACCATCGGAGCAGCAGCAGGAGTATAGCCATGGCGTTTCCCCGCTTCTCCTACCTCAGCCATTCCCATCTCTTGCCATGACCACGAGAGACAAAGACGTGGCTGCCAACTACGATAGATCGGCAGCCCTCCTGCCGCCGTGGATGCTCGGGCACCACCTTGGTGACTAA 717 45.75 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLALKELQNIEQQLDSALKQIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKAQAQNPPSEQQQEYSHGVSPLLLPQPFPSLAMTTRDKDVAANYDRSAALLPPWMLGHHLGD 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 72368 75124 - Carg22770-RA Car18g00016 165718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00016 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Car18g00016 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Car18g00016 238 MobiDBLite consensus disorder prediction 174 206 - -
Car18g00016 238 Coils Coil 122 149 - -
Car18g00016 238 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Car18g00016 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 Coils Coil 151 181 - -
Car18g00016 238 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car18g00016 238 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car18g00016 238 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 215 - -
Car18g00016 238 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Car18g00016 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car18g00016 238 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00389 Car-Chr1:2218796 Car18g00016 Car-Chr18:72368 7.43E-23 dispersed
Car03g01354 Car-Chr3:10245706 Car18g00016 Car-Chr18:72368 3.10E-39 dispersed
Car05g00402 Car-Chr5:2292789 Car18g00016 Car-Chr18:72368 3.10E-16 dispersed
Car12g00107 Car-Chr12:570579 Car18g00016 Car-Chr18:72368 2.23E-93 dispersed
Car15g00885 Car-Chr15:5275713 Car18g00016 Car-Chr18:72368 2.91E-74 dispersed
Car16g00251 Car-Chr16:1590857 Car18g00016 Car-Chr18:72368 3.05E-45 dispersed
Car18g00016 Car-Chr18:72368 Car03g01215 Car-Chr3:9481463 3.28E-47 dispersed
Car18g00016 Car-Chr18:72368 Car18g00017 Car-Chr18:76206 3.25E-56 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5116 PF01486 K-box 1.00E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00016 K09264 - csv:101207225 357.836