Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00017 ATGGGGAGAGGGAGAGTTGAGTTGAAGCGAATTGAGAACAAAATTAACAGGCAGGTTACTTTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTCTGGTGGCTCTAGCATGACTAGGACGCTCGAGAAGTATCGAAGGTGTAGTTATGACATACGGGATGGTGCCCGCCACCTCAATAACAATGGGCAGCCACAGAGCTTTGATGATTACTTGAACCTCAAAGCCACAGTTGAATTGATGCAGCAATCTCAGAGAAACCTTCTGGGGGAAGATTTAGGACCGCTGAATGCCAAGGAACTTGAGCAACTTGAGCATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACGAACCCTAATGGAGCAGCTTGCAGAACTTCAACGCAAGGAGCATATGCTTGTTGAAGACAACCGAAGTTTAAGAAAGAAGCTGGAAGAAAGCAGCGCGCAAGTAGCGGCAGCCTCCGCGGCGTGGGCCTGGGAAGGCGGCGCGGGAGGACACAGCATGGACTATCCCAGCCGCATTGCTTCACAATCAGACGCCTTTTTCTACCCCATAACGCAACCCATTCCCACTTTACAAATTGGGTACAATTCTGTTGGCTCAGTTGGATTGAGTAATAATAATACTAATAATAACAATAGTAATGCTGGAGCTCCACCCCAAAATGGCAATGGATTTCAGCTTGGATGGATGCTCTAA 789 46.89 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSGGSSMTRTLEKYRRCSYDIRDGARHLNNNGQPQSFDDYLNLKATVELMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMEQLAELQRKEHMLVEDNRSLRKKLEESSAQVAAASAAWAWEGGAGGHSMDYPSRIASQSDAFFYPITQPIPTLQIGYNSVGSVGLSNNNTNNNNSNAGAPPQNGNGFQLGWML 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 76206 78760 - Carg22769-RA Car18g00017 165719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00017 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car18g00017 262 Coils Coil 152 186 - -
Car18g00017 262 Coils Coil 123 146 - -
Car18g00017 262 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car18g00017 262 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car18g00017 262 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car18g00017 262 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00388 Car-Chr1:2203234 Car18g00017 Car-Chr18:76206 7.19E-86 dispersed
Car14g01026 Car-Chr14:8791655 Car18g00017 Car-Chr18:76206 3.77E-88 dispersed
Car18g00017 Car-Chr18:76206 Car03g01215 Car-Chr3:9481463 1.20E-45 dispersed
Car18g00016 Car-Chr18:72368 Car18g00017 Car-Chr18:76206 3.25E-56 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5117 PF01486 K-box 2.80E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00017 K09264 K09260 csv:101204197 362.844