Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00022 | ATGGCTTCCCTACTCTCTTCTGCTTTCTTCCTCCTCTTTCTGTTCTTCCACTTCTTCTCTGCAACTTGCACTGAATTCCTCGTCGGTGATGAACATGGGTGGGCTGTCCCTCAGCATAAACACGCTGATAGATACAATAAATGGGCCTCCCATAACAGATTCAACGTTGATGACACCCTCCATTTCAAGTTCGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCGAAGCCTCTGTTGTACAACAACAACGGCGACGCAGTGGTGAGACTTGAGAGAGCAGGGCTGTTCTATTTCATAAGTGGAGTTTCAGGGCACTGTGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCGCTCAGCCCTCCGCAGCCACCCACTGCTCCGCCCCAAAACAACAACACCCCACTCTCTGTTTCATCTCCAATGCTTGCACTTTTCTTCATGTTCTTTGTTTCCTTTCTGTTCATTTGA | 498 | 47.39 | MASLLSSAFFLLFLFFHFFSATCTEFLVGDEHGWAVPQHKHADRYNKWASHNRFNVDDTLHFKFEKDSVMEVTEEEYKQCLSSKPLLYNNNGDAVVRLERAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQNNNTPLSVSSPMLALFFMFFVSFLFI | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 97837 | 98406 | + | Carg22764-RA | Car18g00022 | 165724 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00022 | 165 | Pfam | Plastocyanin-like domain | 34 | 118 | IPR003245 | GO:0009055 | |
| Car18g00022 | 165 | ProSiteProfiles | Phytocyanin domain profile. | 24 | 126 | IPR003245 | GO:0009055 | |
| Car18g00022 | 165 | PANTHER | BLUE COPPER PROTEIN | 9 | 158 | IPR039391 | GO:0009055 | |
| Car18g00022 | 165 | Gene3D | - | 22 | 128 | IPR008972 | - | |
| Car18g00022 | 165 | SUPERFAMILY | Cupredoxins | 23 | 125 | IPR008972 | - | |
| Car18g00022 | 165 | PANTHER | EARLY NODULIN-LIKE PROTEIN 6 | 9 | 158 | - | - | |
| Car18g00022 | 165 | CDD | OsENODL1_like | 24 | 125 | IPR041846 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02561 | Car-Chr4:20208200 | Car18g00022 | Car-Chr18:97837 | 1.67E-41 | dispersed | |
| Car18g00022 | Car-Chr18:97837 | Car04g00882 | Car-Chr4:5077060 | 7.66E-23 | dispersed | |
| Car01g00948 | Car-Chr1:9111882 | Car18g00022 | Car-Chr18:97837 | 1.48E-23 | transposed | |
| Car06g00524 | Car-Chr6:2943197 | Car18g00022 | Car-Chr18:97837 | 1.80E-20 | transposed | |
| Car16g00558 | Car-Chr16:3533549 | Car18g00022 | Car-Chr18:97837 | 2.38E-22 | transposed | |
| Car17g00723 | Car-Chr17:6576187 | Car18g00022 | Car-Chr18:97837 | 5.47E-34 | transposed | |
| Car13g00879 | Car-Chr13:9268310 | Car18g00022 | Car-Chr18:97837 | 4.03E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00022 | - | - | cmo:103495780 | 201.445 |