Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00022 ATGGCTTCCCTACTCTCTTCTGCTTTCTTCCTCCTCTTTCTGTTCTTCCACTTCTTCTCTGCAACTTGCACTGAATTCCTCGTCGGTGATGAACATGGGTGGGCTGTCCCTCAGCATAAACACGCTGATAGATACAATAAATGGGCCTCCCATAACAGATTCAACGTTGATGACACCCTCCATTTCAAGTTCGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCGAAGCCTCTGTTGTACAACAACAACGGCGACGCAGTGGTGAGACTTGAGAGAGCAGGGCTGTTCTATTTCATAAGTGGAGTTTCAGGGCACTGTGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCGCTCAGCCCTCCGCAGCCACCCACTGCTCCGCCCCAAAACAACAACACCCCACTCTCTGTTTCATCTCCAATGCTTGCACTTTTCTTCATGTTCTTTGTTTCCTTTCTGTTCATTTGA 498 47.39 MASLLSSAFFLLFLFFHFFSATCTEFLVGDEHGWAVPQHKHADRYNKWASHNRFNVDDTLHFKFEKDSVMEVTEEEYKQCLSSKPLLYNNNGDAVVRLERAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQNNNTPLSVSSPMLALFFMFFVSFLFI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 97837 98406 + Carg22764-RA Car18g00022 165724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00022 165 Pfam Plastocyanin-like domain 34 118 IPR003245 GO:0009055
Car18g00022 165 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055
Car18g00022 165 PANTHER BLUE COPPER PROTEIN 9 158 IPR039391 GO:0009055
Car18g00022 165 Gene3D - 22 128 IPR008972 -
Car18g00022 165 SUPERFAMILY Cupredoxins 23 125 IPR008972 -
Car18g00022 165 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 158 - -
Car18g00022 165 CDD OsENODL1_like 24 125 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00022 - - - cmo:103495780 201.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02561 Car-Chr4:20208200 Car18g00022 Car-Chr18:97837 1.67E-41 dispersed
Car18g00022 Car-Chr18:97837 Car04g00882 Car-Chr4:5077060 7.66E-23 dispersed
Car01g00948 Car-Chr1:9111882 Car18g00022 Car-Chr18:97837 1.48E-23 transposed
Car06g00524 Car-Chr6:2943197 Car18g00022 Car-Chr18:97837 1.80E-20 transposed
Car16g00558 Car-Chr16:3533549 Car18g00022 Car-Chr18:97837 2.38E-22 transposed
Car17g00723 Car-Chr17:6576187 Car18g00022 Car-Chr18:97837 5.47E-34 transposed
Car13g00879 Car-Chr13:9268310 Car18g00022 Car-Chr18:97837 4.03E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car05g00293 CCT 9 170 Phytocyanin Superfamily AT5G25090 50.9 1.1e-38 157.1
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car20g00109 . 19 229 Phytocyanin Superfamily AT1G08500 59.0 7.5e-63 237.7
Car10g00876 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00022 Car_Chr18 FPKM 42.888382 47.50692 15.232032 15.074443 65.524292 76.990074 62.73241 7.291388 7.575442 7.940657