Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00037 | ATGGCTGCTGAGTTCACTCCAAACTTTCAGACCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCCGATTCCAACATTCCTGTTTTGTTTAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCCGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCCGGAAATTCATTACCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGGCAGGGGAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTGTAGCTGAAAGGATTAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTACCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTACGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACAAGCTTAG | 606 | 43.73 | MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPANQLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYEQA | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 164214 | 165124 | - | Carg22749-RA | Car18g00037 | 165739 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00037 | 201 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Car18g00037 | 201 | MobiDBLite | consensus disorder prediction | 71 | 129 | - | - | |
| Car18g00037 | 201 | Pfam | Helix-loop-helix DNA-binding domain | 126 | 173 | IPR011598 | GO:0046983 | |
| Car18g00037 | 201 | MobiDBLite | consensus disorder prediction | 78 | 103 | - | - | |
| Car18g00037 | 201 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 122 | 172 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car11g00253 | Car18g00037 | CCT | |
| Car10g00215 | Car18g00037 | CCT | |
| Car11g00253 | Car18g00037 | ECH | |
| Car10g00215 | Car18g00037 | ECH | |
| Car13g00858 | Car18g00037 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car10g00215 | Car-Chr10:1031717 | Car18g00037 | Car-Chr18:164214 | 2.91E-64 | dispersed | |
| Car14g00749 | Car-Chr14:4193042 | Car18g00037 | Car-Chr18:164214 | 6.31E-41 | dispersed | |
| Car18g00037 | Car-Chr18:164214 | Car17g01198 | Car-Chr17:9166817 | 4.44E-36 | dispersed | |
| Car11g00253 | Car-Chr11:1404661 | Car18g00037 | Car-Chr18:164214 | 3.60E-60 | wgd | |
| Car13g00858 | Car-Chr13:9133842 | Car18g00037 | Car-Chr18:164214 | 3.93E-94 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5120 | PF00010 | HLH | 3.30E-05 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00037 | - | - | cmax:111489917 | 385.185 |