Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00057 ATGCCGGATTATGTTGCAACTCGCTGGTATCGGGCTCCCGAACTCTGTGGATCATTTTTCTCAAGATATACCCCTGCTATAGATATTTGGAGTATCGGATGCATATTTGCAGAAATGCTTTCGGGAAAACCTTTGTTTCCTGGAAAAAATGTGGCTCACCAGTTAGATTTAATTACCGATCTGTTTGGAACTCCTGATGCTGAATCCGTAGCGAAGATTCGGAATGAAAAGGCAAGAAGGTACCTGGGAAACATGCGTAAGAAAACACCAGTTCCATTCTCACGAAAGTTCCCTAATGCCGACCCATTGGCACTTCGTTTACTGGAACGCCTCCTGGCATTTGATCCCAAACGTCGTCTGACTGCTGCAGAGGCACTTGCGGATTCTTACTTCAGTGATATGACGAAAGCAGAAATTGAACCTTCTATTCAACCAATTTCAAAGCTTGAGTTTGACTTTGAGAGAAAGAGATTAACAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCGAAATGCGTCAGGAGGGCCTACTCGATGGAGGTCAATCTACCTTTATCTATCCAAGTGGTGTTGATCGATTTAAACTTCAGTTTGCGCATCTGGAAGAGAACTTCAGTAAAGGTCAAAGAAGTGCTCCACTTCAAAGGCAGAACGTTTCCTTACCTCGGGAGAAGGTTACTCCACCTGAGCACAAGAACGCTGAGCATAACAATGAATTTGGAAGGGGGGAAGAGAAGAGTGCCCACCTCTTCAAAAGTGCTAGCATTAGTGCATCGAGGTGTGTAGGGGTAATACCGAAGGAGAAGTCTGAGGAGGAAGAAACGAGTTCTGAGGTGAAAAGTGAAGCAGTTGATGAATCGACTCAAAAGATTGCAGTCCTTCAGAGTTGA 909 43.78 MPDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLSGKPLFPGKNVAHQLDLITDLFGTPDAESVAKIRNEKARRYLGNMRKKTPVPFSRKFPNADPLALRLLERLLAFDPKRRLTAAEALADSYFSDMTKAEIEPSIQPISKLEFDFERKRLTKDDVRELIYAEILEYHPEMRQEGLLDGGQSTFIYPSGVDRFKLQFAHLEENFSKGQRSAPLQRQNVSLPREKVTPPEHKNAEHNNEFGRGEEKSAHLFKSASISASRCVGVIPKEKSEEEETSSEVKSEAVDESTQKIAVLQS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 284844 288564 - Carg06622-RA Car18g00057 165759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00057 302 Pfam Protein kinase domain 3 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00057 302 ProSiteProfiles Protein kinase domain profile. 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00057 302 MobiDBLite consensus disorder prediction 214 228 - -
Car18g00057 302 MobiDBLite consensus disorder prediction 269 302 - -
Car18g00057 302 MobiDBLite consensus disorder prediction 231 253 - -
Car18g00057 302 MobiDBLite consensus disorder prediction 213 253 - -
Car18g00057 302 MobiDBLite consensus disorder prediction 271 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00057 Car-Chr18:284844 Car17g00253 Car-Chr17:1566217 3.83E-118 dispersed
Car10g00306 Car-Chr10:1502928 Car18g00057 Car-Chr18:284844 1.55E-130 wgd
Car11g00281 Car-Chr11:1535991 Car18g00057 Car-Chr18:284844 3.47E-138 wgd
Car13g00832 Car-Chr13:9009266 Car18g00057 Car-Chr18:284844 2.33E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89497 PF00069 Pkinase 1.10E-19 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00057 - - bhj:120082540 464.536