Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00069 ATGGCAGCAGATGGCCGGAGACGAGCAAACAAAAGTCTCGAGACCCTTCTCGATAACGACAAGGTTGTCGCTCCGCCACCGCAGCTGCAAGTCAAGTTGTTGCCGGGACAAGGCTTGGAATTCAACAACTTGTCATATAGTGTTCTAAAGAAGTTTAAAAAGGATGGTGTTTGGATCAAAAGAGAAGCTTATCTTTTGAATGATATCTCTGGACAAGCGATGCGAGGTGAAATCATGGCTATCATGGGGCCGAGTGGCGCTGGGAAATCGACATTTCTTGATGCGTTGGCTGGTCGGATGGCGAAAGGAAGCCTTGAAGGATCTGTTAAGATTGATGGAAGACCTGTGACTGCAAGTTACATGAAGATGGTTTCATCTTATGTTATGCAAGATGACCAACTCTTCCCAATGTTAACTGTGTTTGAGACATTCATGTTTGCAGCTGAGGTCAGGCTTCCATCCTCTATTTCTAGGGATGAAAAGAAGAACAGAGTTTACGAGCTTATCGACCAACTAGGAATCGACATCATCCACAAACCGTCGCTCTTATTTTTGGACGAGCCGACCTCCGGGCTTGATTCTACGAGTGCCTATAGTGTAGTAGAGAAGGTGAAAGAGATAGCTCGAAATGGCAGCATTGTTCTGATGACCATTCATCAACCTTCTTACAGAATTCAACTACTACTTGATCGCATCACTGTTCTTGCCAGGGGGAGATTGATATACGTTGGAAATCCATTCAACCTTTCTGCTCATCTCTCTGGCTTTGGAAGGCCAGTGCCAGATGATGAAAATGGCATAGAATATCTATTGGATGTGATCAAGGAATACGACGAATCAAATGTCGGGTTGGAGCCTCTCGTGCTATACCAACGACACGGTATCAAACCCGATCTAGTTGCAAAGACTCCTGTTCCGAAAACACCTAAAGCTCCTTACAAAAACGGTCCGGGGCCAGGACCGAAGTTCCTAAACCTTCGTAGTCAAGCATTCTCCATGACATCAGGGCCAAACTCGAGCCAATTTGATTCAGCATATGGATATGATGATAACGAGGATGACGACTTTGATAAATCTCTCGAACGGAAATCAGCTAGAACTCCGATGAATAACCGTAGCGGTGTTTACTACCCTCCTTTAGCATCTCAATTCTACAAAGATTTGTCTGCTTGGGTCTATAATGGTGTTAAAGGAACTCCTGGTCGACGACCATCGTGGACTCCTGCAAGGACGCCGGGACAAACACCAGGAAAAACACCTATATCCGGAGTTAGAAGTGTCGTTTCGAGTCAATTTCCGTCGTCTCATCAAACGACTACTCACGCAAAAATACCTTCCGTCTTCAACATGTCAATGGACTCTCATTTACCTTCTTTTGAAGAGTTGGACATGGAAGAAGTTCTTGATGAGCCAGACCATGGTCCCAAATATGCAAATCCTTGGCTCCGTGAGGTCGTCGTGCTTTCATGGAGGACGATGCTCAACGTGATCCGCACCCCAGAATTGTTTCTATCTCGTGAGATTGTATTGACAGTAATGGCGATAATCCTTTCGACTATGTTCAAAAATCTCGGTCATGCTACGTTTAGAGACATCAACAGACTTCTCAACTTCTACATCTTTGCAGTTTGTCTCGTTTTCTTTTCCTCAAACGACGCTGTCCCGACATTCATTCAAGAAAGATTCATCTTCATCAGAGAGACATCTCACAATGCATATCGAGCTTCGTCATATGTCATTTCCTCCCTCATTGTCTATCTCCCATTTTTCGCGATTCAAGGCTTCACATTCGCAGCCATAACCCAATTCTGGCTACACTTGAAAAGCAACCTGTTCTTCTTCTGGATATCACTTTTTGCCTCACTCATCACAACAAATGCATATGTTATGCTTGTGAGTGCGTTGGTACCAAGCTATATCACAGGCTATGCAGTTGTAATAGCCACCACAGCCATTTTCTTCCTCACTTGTGGATTCTTCCTGAAACGAACTCAAATACCAATATACTGGAGATGGCTTCATTACATCTCTGCAATAAAGTATCCATTTGAATCCTTGTTGATCAATGAATTCAAAGGGAAAAGATGTTATCAGGGAAATCCCAACGATCTTTCGCCCGGGCCGTTGGGAGATGTTAGGATTAGCAAGCTGCACAATGTTTCTAGAGATTTGCAGCCAAACTGCATGCTGATCGGAGAAGACGTTCTGTTCTCGATGGACGTTAATATGCGAAATATATGGTATGACATTGGTATCTTACTAGCTTGGGGGGTGCTTTACCGGCTGTTCTTCTATGTGGTTCTTAGATTTTACTCCAAGAATGAGAGGAAATGA 2334 44.04 MAADGRRRANKSLETLLDNDKVVAPPPQLQVKLLPGQGLEFNNLSYSVLKKFKKDGVWIKREAYLLNDISGQAMRGEIMAIMGPSGAGKSTFLDALAGRMAKGSLEGSVKIDGRPVTASYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPSSISRDEKKNRVYELIDQLGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGRLIYVGNPFNLSAHLSGFGRPVPDDENGIEYLLDVIKEYDESNVGLEPLVLYQRHGIKPDLVAKTPVPKTPKAPYKNGPGPGPKFLNLRSQAFSMTSGPNSSQFDSAYGYDDNEDDDFDKSLERKSARTPMNNRSGVYYPPLASQFYKDLSAWVYNGVKGTPGRRPSWTPARTPGQTPGKTPISGVRSVVSSQFPSSHQTTTHAKIPSVFNMSMDSHLPSFEELDMEEVLDEPDHGPKYANPWLREVVVLSWRTMLNVIRTPELFLSREIVLTVMAIILSTMFKNLGHATFRDINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAAITQFWLHLKSNLFFFWISLFASLITTNAYVMLVSALVPSYITGYAVVIATTAIFFLTCGFFLKRTQIPIYWRWLHYISAIKYPFESLLINEFKGKRCYQGNPNDLSPGPLGDVRISKLHNVSRDLQPNCMLIGEDVLFSMDVNMRNIWYDIGILLAWGVLYRLFFYVVLRFYSKNERK 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 353887 357212 + Carg06634-RA Car18g00069 165771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00069 777 Pfam ABC transporter 66 175 IPR003439 GO:0005524
Car18g00069 777 SMART AAA_5 75 247 IPR003593 -
Car18g00069 777 Pfam ABC-2 type transporter 485 691 IPR013525 GO:0016020|GO:0140359
Car18g00069 777 MobiDBLite consensus disorder prediction 300 356 - -
Car18g00069 777 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 262 IPR003439 GO:0005524
Car18g00069 777 MobiDBLite consensus disorder prediction 327 346 - -
Car18g00069 777 MobiDBLite consensus disorder prediction 402 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00069 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101210003 1345.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00519 Car-Chr7:2620908 Car18g00069 Car-Chr18:353887 2.58E-176 dispersed
Car18g00069 Car-Chr18:353887 Car04g02521 Car-Chr4:19987438 1.69E-60 dispersed
Car18g00069 Car-Chr18:353887 Car14g00152 Car-Chr14:715992 1.16E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012739 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00069 Car_Chr18 FPKM 13.944361 13.806636 21.647976 23.159698 20.808224 16.816219 23.674345 14.459884 18.035105 18.976625