Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00075 | ATGGCTCTGGTTCGTGATCGCCTCCAGTTGAAACTCCGCCTCCCGGACCTCTCCGACTGCGGTCCCCGCTTCCCCCTCCCCCTCCCACCCTCCTCTGCCCCTGCCATCTCCTCCGCCGACCTCGAAAAGCTCCAAGTCCTCGGGCACGGCAACGGTGGCACAGTCTACAAAGTCCGCCACAAGCGAACCTCCAACATCTACGCTCTCAAGGTCGTCCACGGCGACGGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCTTACGTCGTGAAATGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCGAGGATCGCTTGATACGCTCTTGAAGAAGAATACCACGCTGTCAGAGTCCACGCTCGCTCACGTATCGCGTCAGGTTCTTAATGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTCTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGTAGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTGGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCGTGGTCAGAGACCGGATTGGGCGACTCTGATGTTTGCGATTTGCTTTGATGAGCCGCCGACGCTGCCGGAGGATGCGTCAGAGGAGTTTCGAAGCTTCGTCCAGAGTTGTTTGCAGAAGGAATCGAGCAAGAGATGGACGGCGGCGCAATTATTAACGCATCCGTTTGTAAGTAAGGAATCGAGATCCGATCGGTGA | 933 | 52.63 | MALVRDRLQLKLRLPDLSDCGPRFPLPLPPSSAPAISSADLEKLQVLGHGNGGTVYKVRHKRTSNIYALKVVHGDGDPTVRRQVFREMEILRRTDSPYVVKCHGIFEKPSGDVTILMEYMDRGSLDTLLKKNTTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPRGQRPDWATLMFAICFDEPPTLPEDASEEFRSFVQSCLQKESSKRWTAAQLLTHPFVSKESRSDR | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 394422 | 395354 | - | Carg06640-RA | Car18g00075 | 165777 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00075 | 310 | Pfam | Protein kinase domain | 42 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Car18g00075 | 310 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672|GO:0006468 | |
| Car18g00075 | 310 | ProSitePatterns | Protein kinases ATP-binding region signature. | 47 | 70 | IPR017441 | GO:0005524 | |
| Car18g00075 | 310 | ProSiteProfiles | Protein kinase domain profile. | 41 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00020 | Car-Chr1:111520 | Car18g00075 | Car-Chr18:394422 | 1.69E-96 | dispersed | |
| Car14g00608 | Car-Chr14:3382833 | Car18g00075 | Car-Chr18:394422 | 3.55E-45 | dispersed | |
| Car14g01085 | Car-Chr14:9531660 | Car18g00075 | Car-Chr18:394422 | 1.02E-91 | dispersed | |
| Car13g00812 | Car-Chr13:8898235 | Car18g00075 | Car-Chr18:394422 | 1.79E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 89500 | PF00069 | Pkinase | 1.10E-67 | CL0016 | Car | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00075 | K20604 | - | csv:101203133 | 549.666 |