Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00079 ATGGTGGCTGATCTCTCCTCTCTTGATCCTTTGTCTAATTGCTTTCATACCAATGGAACCAATTCCAAAAGAAAAAGACGACCCGCGGGCACTCCTGACCCAGATGCCGAGGTGGTTTCTCTCTCTCCGAAAACCCTATTGGAATCAGATAGTTACGTATGTGAAATATGTCATCAGGGTTTTCAGAGAGATCAGAATCTACAAATGCATCGGCGTCGACATAAGGTGCCGTGGAAGCTGTTGAAGAGGACCGAGACGACGACGACGACGACGCGTAAACGGGTGTTTGTTTGTCCGGAACCGAGCTGCTTACATCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATTAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTATGTGAAAAATGCTCTAAAGGGTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACGTGTGGGACTAGAGGCCATTCATGTGACTGTGGTCGAGTTTTCTCAAGGGTGGAGAGTTTCATAGAGCATCAAGATAGTTGCAAATTGGGTCATCATCAACAACCAGAAAAGGAGGCATCTTTACAACCACCACCACCACCACCACCACCACCACCTCCTTGTTTATCAAGAACAGCTTCAAGCCCAACGCCAACTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAACCCACACACCAAAAACTCCCCAAAAACTCATCACCCATCATCAAAATTTGGACCTTCAACTTTCAACCTCTTCAAATTCCATTAAAGTTCAAGTTTCTCCCAAAAAACATGAAAATTACTCAACCCAGTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGACAAAAATGAACAAAAAGATCATTACCAAATGAATTTTGATGAACAAATTGGAAATGGGTTGAATTTATTGAAGCTGAAAGAAGAAGCTATAGAGAGAATGAGAGTGGCAAGGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAACAGATTGAATTGGCTGAGAAGGAGTTAGCCAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAACAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCATTGCACAAAACTTGA 1191 42.15 MVADLSSLDPLSNCFHTNGTNSKRKRRPAGTPDPDAEVVSLSPKTLLESDSYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKRTETTTTTTRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQPEKEASLQPPPPPPPPPPPCLSRTASSPTPTPSSDTNFSFLNQTHTPKTPQKLITHHQNLDLQLSTSSNSIKVQVSPKKHENYSTQLQLSIGSCNYGDKNEQKDHYQMNFDEQIGNGLNLLKLKEEAIERMRVAREEKAVAEEARNEAKKQIELAEKELANAKRMRQQAQAELQRALALKEHAINKINSTILQITCQVCRQHFHPLHKT 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 417681 419508 - Carg06644-RA Car18g00079 165781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00079 396 Coils Coil 311 373 - -
Car18g00079 396 MobiDBLite consensus disorder prediction 192 212 - -
Car18g00079 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Car18g00079 396 MobiDBLite consensus disorder prediction 14 38 - -
Car18g00079 396 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Car18g00079 396 MobiDBLite consensus disorder prediction 213 233 - -
Car18g00079 396 MobiDBLite consensus disorder prediction 178 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00806 Car18g00079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00684 Car-Chr1:4087910 Car18g00079 Car-Chr18:417681 2.32E-40 dispersed
Car10g00048 Car-Chr10:211520 Car18g00079 Car-Chr18:417681 1.47E-17 dispersed
Car11g00030 Car-Chr11:157303 Car18g00079 Car-Chr18:417681 1.41E-17 dispersed
Car13g00980 Car-Chr13:9764118 Car18g00079 Car-Chr18:417681 2.92E-55 dispersed
Car15g00826 Car-Chr15:4705386 Car18g00079 Car-Chr18:417681 4.09E-124 dispersed
Car13g00806 Car-Chr13:8865766 Car18g00079 Car-Chr18:417681 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5125 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00079 K25871 - csv:101210748 568.155