Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00085 ATGCCTCTCCACATAGTTCGCCCATTAATTTTTGTTTCGAAATTAACAAAATCACGACATTCAATTGCTTTGAGAATTTCTCACAAGTCTTTCATTTCAAAATCAGAGATCTCGTCCGTGAAGCTAGAAGATTTCTATGTCAATCTCTTGCATCGGTGTGTTCAAACCTCCGATTCCCGCCATGGATCGGCAATTCATGCGAAGTTCCTCAAAGGATTTCTTCCATATTCTCTTTTCTTCCACAACCATGTACTTAATTTCTATGTCAAATGTGGAAGTCTCTCATGTGGCCTGCAACTGTTCGACGAAATGCCTGAGAGAAATGTTGTGTCCTGGTCTGCAGTCATTGCTGGGTTCGTCCAACACGGCCGACCCAATGAAGCCCTCTCTCTGTTTAGCCGCATGCATTGTGATGGCACGATAATTCCCAACGAATTCACCCTTGTAAGTGCTCTTCATGCTTGTTCTTTAACTCAGAGGCTGATATGTTCGTACCAAATTTACGCATTAGTTCTTCGCTTAGGATATGGATCGAATATTTTCCTCATGAATGCGTTCTTAACTGCTTTAATTAGGCATGAGAAATTGCTGGACGCTTTAGAAGTTTTTGAGAGTTCTTCATCCAAGGATATTGTATCATGGAATGCTATGATGGCTGGTTATTTGCAATTAGCATATTTAGAACTGCCTAAGTTTTGGCGCCGGATGAATCTCGAGGACATTAAGCCTGATAATTTTACATTTGCTAGTATCTTAACTGGGTTGGCTGCTCTCTCTGAGTTTAAACTGGGTTTGCAAGTTCATGGACAGCTTGTGAAAAGTGGATATGGGAATGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAGAATCAGAAATTGTTAGATGGTTTTAAAGCTTTTGATGAAATGCCTTCAAGTGATGTGTGTTCTTGGACTCAGATGGCTGCAGGGTGCCTCCATTGTGGTGAACCAATGAAGGCACTCGAGGTCATTTACGATATGAAAAACATCGGCGTGAGGCTAAATAAGTTCACCCTTGCAACTGCCTTGAATGCTTCTGCTAATTTAGCATCCATAGAAGAAGGGAAGAAATTCCATGGATTGAGAATTAAACTTGGAGCTGATATTGATGTTTGTGTTGATAATGCTCTACTTGATATGTATGCAAAATGTGGATGTATGAGCAGTGCAAATGTTGTCTTTCGTTCAATGGATGAACAATCTGTTGTCTCATGGACTACCATGATTATGGGATTTGCACACAATGGCCAAGCAAAAGAAGCCCTTCAAATCTTTGATGAAATGAGAAAAGAAGGAGCTGAGCCTAATCACATCACTTTTATTTGTGTCCTCTATGCTTGTAGCCAAGGAGGTTTCATTGATGAAGCATGGAAATACTTCTCTTCCATGAGTGCTGACCATGGGATTTCACCCTCTGAAGATCACTATGTATGTATGGTGAATCTCCTAGGCCGAGCTGGGTGTATAAAAGAAGCCGAGGATTTGATCAGACGAATGCCGTTTAAACCGGGTTCTTTGGTCTGGCAAACATTGCTTGGTGCATGCTTAGTTCATGGCGACGTAGAGACGGGAAAACGAGCAGCCGAGCACGCGTTGAATTTGGATCAAAACGATCCATCGACTTATGTTTTGTTATCGAACATGTTTGCTGGTCGGAGTAACTGGGACGGTGTGGGAAGTTTGAGAGAGCTAATGGAAACTAGAGATGTAAAGAAAGTACCTGGATTCAGTTGGATGTAA 1770 41.41 MPLHIVRPLIFVSKLTKSRHSIALRISHKSFISKSEISSVKLEDFYVNLLHRCVQTSDSRHGSAIHAKFLKGFLPYSLFFHNHVLNFYVKCGSLSCGLQLFDEMPERNVVSWSAVIAGFVQHGRPNEALSLFSRMHCDGTIIPNEFTLVSALHACSLTQRLICSYQIYALVLRLGYGSNIFLMNAFLTALIRHEKLLDALEVFESSSSKDIVSWNAMMAGYLQLAYLELPKFWRRMNLEDIKPDNFTFASILTGLAALSEFKLGLQVHGQLVKSGYGNDICVGNSLCDMYIKNQKLLDGFKAFDEMPSSDVCSWTQMAAGCLHCGEPMKALEVIYDMKNIGVRLNKFTLATALNASANLASIEEGKKFHGLRIKLGADIDVCVDNALLDMYAKCGCMSSANVVFRSMDEQSVVSWTTMIMGFAHNGQAKEALQIFDEMRKEGAEPNHITFICVLYACSQGGFIDEAWKYFSSMSADHGISPSEDHYVCMVNLLGRAGCIKEAEDLIRRMPFKPGSLVWQTLLGACLVHGDVETGKRAAEHALNLDQNDPSTYVLLSNMFAGRSNWDGVGSLRELMETRDVKKVPGFSWM 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 452748 454517 + Carg06650-RA Car18g00085 165787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00085 589 Pfam PPR repeat 313 342 IPR002885 -
Car18g00085 589 Pfam PPR repeat 385 410 IPR002885 -
Car18g00085 589 Pfam PPR repeat 486 509 IPR002885 -
Car18g00085 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Car18g00085 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Car18g00085 589 Pfam E motif 528 589 IPR046848 -
Car18g00085 589 Pfam PPR repeat family 411 457 IPR002885 -
Car18g00085 589 Pfam PPR repeat family 107 155 IPR002885 -
Car18g00085 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00085 - - - csv:101211489 1073.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00085 Car-Chr18:452748 Car15g00163 Car-Chr15:884004 6.96E-28 dispersed
Car18g00085 Car-Chr18:452748 Car18g00767 Car-Chr18:8709542 2.05E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00085 Car_Chr18 FPKM 29.152029 26.464346 20.019165 21.394398 21.077225 22.106529 21.241997 17.936796 19.190044 17.255234