Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00086 ATGTCTTCGTCCGGTGGTAACTCTGGCGACGGAGCTGGCGGTGGCGCCGCCTCGCAGGGCCATCAGCTCTATTTCTGCTATACGTGCAATCGTACGGTAACAATTGCTCACTCATCCTCCTCCGATCTTTTGTGCCCCAACTGCAATGATAGCTTCGTTGAAGAAATGGAAACTCCAAACCCTAACCCTAGCCCTGTTCCCAATCCTTTCGTTTCCTTCACATCCGAGGCATTTCCTCCGTTCAGTACCGGGGGTGGTGGAAATGGCGGTTTCCCGATCATATTCTCCACGTCATCGTCTTCCGGTGGCATTGGTGCTGGCGGTTCTATGATGAATGATCTCTCGGCGCTGTTGGGAGGTGGTTCTTTTCGATCGTCGTCCTTGCAAGACCCTGACGGTTTTAATCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCCTCGGGAGAGGCGTTTCATCCCTCTTCCAATTTCAATCTTGGCGACTACTTCTTCGGCCCCGGCCTTGAGCAGCTGATTCAACAGCTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCTGCCTCGAAGTCGGCGATTGAGGCACTTCCAAATATCAAAATTACGGAGGAATTGCTGGCGTCGGATTCTTCACAGTGTGCTGTGTGTAAGGACACATTTGAGCTCAACGAAGAGGCGAAACAGATGCCTTGTAAACACATATATCATGAAGATTGTATCGTTCCTTGGCTGGAATTGCATAATTCTTGTCCAGTGTGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGACTCGCGGGACTTCAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACTCTTCGGCGATTCTTCAACCGGTGGGGAAAATTTTGGTGGAAGCGATCCTAATTCTGGCGAGAATTCACAGACACAACAAATGGCTGATCGGAGGGTGAGAAGGATTGCTTTTCCTTGGCCATTCAGAGGTTTTGGTCCAGCTGCTGAAACTAGCGACAGCGGAGGTGGGAACAACAGCGGAAATAGCGACGATCCTAGCTCCAGAAATCGGGGAAGCCAGAACTCTTCAGAGCCTATGGAGGAAGATCTTGATTGA 1134 49.91 MSSSGGNSGDGAGGGAASQGHQLYFCYTCNRTVTIAHSSSSDLLCPNCNDSFVEEMETPNPNPSPVPNPFVSFTSEAFPPFSTGGGGNGGFPIIFSTSSSSGGIGAGGSMMNDLSALLGGGSFRSSSLQDPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPSSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPNIKITEELLASDSSQCAVCKDTFELNEEAKQMPCKHIYHEDCIVPWLELHNSCPVCRYELPTDDPDYEQRTRGTSAPNRSQSESQLFGDSSTGGENFGGSDPNSGENSQTQQMADRRVRRIAFPWPFRGFGPAAETSDSGGGNNSGNSDDPSSRNRGSQNSSEPMEEDLD 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 456093 457226 + Carg06651-RA Car18g00086 165788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00086 377 MobiDBLite consensus disorder prediction 268 377 - -
Car18g00086 377 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Car18g00086 377 MobiDBLite consensus disorder prediction 278 322 - -
Car18g00086 377 MobiDBLite consensus disorder prediction 344 371 - -
Car18g00086 377 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Car18g00086 377 Pfam Ring finger domain 222 264 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00086 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 617.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00960 Car-Chr2:6762800 Car18g00086 Car-Chr18:456093 5.31E-47 dispersed
Car03g00232 Car-Chr3:3592274 Car18g00086 Car-Chr18:456093 4.57E-31 dispersed
Car04g02172 Car-Chr4:17635470 Car18g00086 Car-Chr18:456093 9.64E-74 dispersed
Car04g02723 Car-Chr4:21056881 Car18g00086 Car-Chr18:456093 2.86E-34 dispersed
Car05g01278 Car-Chr5:11852856 Car18g00086 Car-Chr18:456093 4.97E-12 dispersed
Car07g01158 Car-Chr7:6989163 Car18g00086 Car-Chr18:456093 6.17E-33 dispersed
Car14g00106 Car-Chr14:532936 Car18g00086 Car-Chr18:456093 7.93E-35 dispersed
Car15g00217 Car-Chr15:1204428 Car18g00086 Car-Chr18:456093 1.70E-36 dispersed
Car15g00621 Car-Chr15:3456188 Car18g00086 Car-Chr18:456093 5.87E-16 dispersed
Car15g00737 Car-Chr15:4126245 Car18g00086 Car-Chr18:456093 7.75E-39 dispersed
Car17g00513 Car-Chr17:4634469 Car18g00086 Car-Chr18:456093 5.97E-40 dispersed
Car18g00086 Car-Chr18:456093 Car20g00003 Car-Chr20:17580 9.26E-46 dispersed
Car01g01302 Car-Chr1:11713951 Car18g00086 Car-Chr18:456093 1.06E-26 transposed
Car11g01594 Car-Chr11:12615818 Car18g00086 Car-Chr18:456093 9.47E-13 transposed
Car17g00872 Car-Chr17:7329457 Car18g00086 Car-Chr18:456093 5.58E-27 transposed
Car15g00265 Car-Chr15:1452823 Car18g00086 Car-Chr18:456093 4.00E-25 wgd
Car18g00086 Car-Chr18:456093 Car04g01702 Car-Chr4:9775204 2.94E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00086 Car_Chr18 FPKM 4.423453 4.359702 7.467178 6.220903 3.898513 3.837738 3.79741 1.435269 1.7783 1.428028