Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00089 ATGGGTTGTCAAGCCGTTGCCAAGCTCGTAGGGTCGGCCATTAGTCGAAAAGCTTCTTCATCTTCATCATCCTCTGTGTTTTCGCAGGCAGCGTCGCAGATTCGGCATTACGCAGCTGCACCGCCACCACCGCCGGCGGTATTCGTAGATAAAAACACTCGCGTCATATGTCAAGGGATCACTGGTAAAAACGGTACCTTCCACACCGAGCAGGCAATCGAATATGGCACGAAAATGGTCGGTGGTGTAACGCCAAAGAAGGGTGGAACCGAACACTTGGGACTTCCTGTTTTTAACACAGTTGCTGAAGCCAAAGCTGAAACGAAGGCCAATGCATCAGTAATTTATGTCCCTCCGCCGTTTGCTGCAGCAGCTATCTTGGAGGCGATGGAAGCTGAGCTAGATCTTGTAGTTTGTATAACGGAAGGGGTCCCACAGCATGATATGGTAAGAGTTAAGGCTGCTTTAAACAAACAATCTAAAACTAGGTTGATTGGCCCTAACTGCCCTGGTATTATCAAGCCTGGAGAGTGTAAAATTGGAATTATGCCTGGGTACATCCACAAACCTGGGCGCATTGGCATTGTATCACGATCTGGCACCTTGACCTATGAAGCGGTTTTCCAAACTACTGCTGTTGGCCTTGGACAATCCACGTGCGTAGGTATTGGAGGAGATCCCTTCAATGGGACAAACTTTGTTGATTGCATCGAGAAGTTCCTTGCTGATCCTCAGACAGAAGGTATTGTTCTAATTGGAGAAATTGGTGGGACTGCGGAAGAGGATGCTGCTGCTTTGATAAAGGAAAGTGGGACCGAGAAGCCTATCGTTGGCTTCATTGCTGGCCTTACTGCTCCCCCAGGCCGTCGCATGGGTCATGCTGGTGCCATTGTTTCGGGTGGAAAAGGTACCGCCCAAGACAAAATCAAGACACTGCGAGAAGCTGGAGTAACAGTGGTCGAGTCGCCTGCGAAAATTGGCGTTGCAATGCTTGATGTCTTCAAACAGAGAGGCCTCGTCAGTTAA 1026 49.22 MGCQAVAKLVGSAISRKASSSSSSSVFSQAASQIRHYAAAPPPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGVPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVGFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDVFKQRGLVS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 473102 477731 - Carg06654-RA Car18g00089 165791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00089 341 Pfam CoA binding domain 50 143 IPR003781 -
Car18g00089 341 Pfam CoA-ligase 196 317 IPR005811 GO:0003824
Car18g00089 341 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 197 226 IPR033847 -
Car18g00089 341 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 282 295 IPR017440 -
Car18g00089 341 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 45 334 IPR005810 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00089 K01899 LSC1; succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - csv:101206269 608.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00797 Car18g00089 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00645 Car-Chr12:4352900 Car18g00089 Car-Chr18:473102 9.62E-24 dispersed
Car17g00343 Car-Chr17:2146131 Car18g00089 Car-Chr18:473102 4.01E-24 dispersed
Car13g00797 Car-Chr13:8811132 Car18g00089 Car-Chr18:473102 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00089 Car_Chr18 FPKM 5.322737 6.765412 0.254123 0.178067 15.868902 12.578842 14.321858 0.0 0.0 0.0