Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00113 ATGAGCTTGACCGTTTCAGCAATGGGGAAGTCGCCGGGGAAATGGATTAAAACTATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAACAGAGAGAAAAGTGGAAACGAGAAGGAAGTATTGGTTTCTGTCAAGGCATCAGAGGCAACTTCTGTTATTACGCATACTGCAGCTTCGGAACCAACCCCAAATACCATTGAGACGAACGAAGTGGTGTCAAAAATTACCCACAATGAGGCAGCTAATGCGTCGTGTGAAAGATCGATATCAATTACAGGAAATCAAGATACAGAAATTCAAGGTTCTACGTGTCAAGATGCACCATCTGATCCTGAGAGAATCCGTAGAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCCCTTATTCGTGGTCACTTAGTGAGGAGACAAGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTGCTCGGGGAAGGAGAGTGAGGCTTTCTGATGTCGGTCTCGAAGCGCAAAACAAATATAGATTAGTGCAGCCACAGGAGCAGCTATTAGTGGCCCGTGCTGGAGTAAGTCTCTCGACACGTATGGCGAAGCTTTCAGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACAGCCAAACCTCTACAAATCTATTTTGATAATGAAGATGAAAATTCAGCCTTGAAATGGTTAGAGCGCTGGTCAAATTCTCGATTCTGGAAACCGATTCCCCCAGTAAAAAAGGCTGCAGAGTTTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACGGGCGAGGGACATACCGTGAGGTCAAAACGAACGAGGAGAGTTCCCACTGTAAACAATGACAGTACTGTCCAATCATCTGCAGAAGTCGAGAAACCTAAACGTACATTTAGGAAAGCTTCAAGTCACTCAGCTGCAGAGCAGGCTCAGGAGAATCCTCAGATGGAGCTTGAAAAGGTCAAGCGCAGTCTAAGAAAGGTCCATAACCCTGTTCTCGAGAATCCTACCCCAATTGAAGCAGATGCGGAGAAGCCGAAGGAAAGTTCGGATAAGGTTTCTAATGGTCTAGGCCGTGACATTTTGGCCAGAGGTACTAATAATTCTTCTGAGAAAATAAAAAAAGAGGCTATCTCAACGATACCCGTCCAGCCTGATTTGGAAACAACTCCTGAGTCGATACCGATAAAAGAGGTACTTAATGTAACTAATGGTGAGCCAGTTGTAGAATCACAGCCTTTGATTGAGGGCAGTGATAAAGATAAGAGCATAGCTGGTAATGAGGCTGCTGTGGAGACTAAGCCTTTGACAGAGAGCTACCCGAAAGATGCCATCAACCAATTATTAACAAATGGGGAATCAAACCATAAGGAAGATAACGCTAACAACGAGAACCCGAAATCTGGTAGGAAAGGCTCTACTCCAGCCAAGCAAGAACGAGTGGAGAACGGGTTGCAACACAGTCCAACCATACCTAGCTACATGGTAGCAACTGAATCTGCAAAGGCAAAACTAAGAGCACAAGGATCTCCAAGATTCGAACAGGAGAGTGAAAGAAATAACAACAATCGACGACATTCTTTACCGTCATCCACCAATGCTAAACTCAGCTCACCGTCTCCACGAACACAAAGACTTGTTCAAGCAGGCGGTAAAGGCGGAAACAAAAATGACAAGGCACACATGGGATCCAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGGTAA 1812 44.76 MSLTVSAMGKSPGKWIKTILFGKKSSKSNLSKNREKSGNEKEVLVSVKASEATSVITHTAASEPTPNTIETNEVVSKITHNEAANASCERSISITGNQDTEIQGSTCQDAPSDPERIRREEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEAQNKYRLVQPQEQLLVARAGVSLSTRMAKLSANAFTIKLASSTTAKPLQIYFDNEDENSALKWLERWSNSRFWKPIPPVKKAAEFKSQRRLSTGQTGEGHTVRSKRTRRVPTVNNDSTVQSSAEVEKPKRTFRKASSHSAAEQAQENPQMELEKVKRSLRKVHNPVLENPTPIEADAEKPKESSDKVSNGLGRDILARGTNNSSEKIKKEAISTIPVQPDLETTPESIPIKEVLNVTNGEPVVESQPLIEGSDKDKSIAGNEAAVETKPLTESYPKDAINQLLTNGESNHKEDNANNENPKSGRKGSTPAKQERVENGLQHSPTIPSYMVATESAKAKLRAQGSPRFEQESERNNNNRRHSLPSSTNAKLSSPSPRTQRLVQAGGKGGNKNDKAHMGSRDGNGKVIQADWRR 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 605118 611517 - Carg06678-RA Car18g00113 165815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00113 603 MobiDBLite consensus disorder prediction 302 316 - -
Car18g00113 603 Pfam Protein of unknown function (DUF4005) 499 581 IPR025064 -
Car18g00113 603 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Car18g00113 603 MobiDBLite consensus disorder prediction 534 548 - -
Car18g00113 603 ProSiteProfiles IQ motif profile. 143 165 IPR000048 GO:0005515
Car18g00113 603 MobiDBLite consensus disorder prediction 583 603 - -
Car18g00113 603 MobiDBLite consensus disorder prediction 549 570 - -
Car18g00113 603 MobiDBLite consensus disorder prediction 340 354 - -
Car18g00113 603 MobiDBLite consensus disorder prediction 365 379 - -
Car18g00113 603 MobiDBLite consensus disorder prediction 504 520 - -
Car18g00113 603 Pfam IQ calmodulin-binding motif 121 140 IPR000048 GO:0005515
Car18g00113 603 Pfam IQ calmodulin-binding motif 143 160 IPR000048 GO:0005515
Car18g00113 603 MobiDBLite consensus disorder prediction 274 397 - -
Car18g00113 603 MobiDBLite consensus disorder prediction 456 603 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00113 - - - csv:101214198 931.784
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00773 Car18g00113 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00243 Car-Chr5:1358464 Car18g00113 Car-Chr18:605118 3.09E-21 dispersed
Car12g00395 Car-Chr12:2521464 Car18g00113 Car-Chr18:605118 7.22E-20 dispersed
Car18g00113 Car-Chr18:605118 Car09g00291 Car-Chr9:1565094 1.10E-21 dispersed
Car13g00773 Car-Chr13:8631561 Car18g00113 Car-Chr18:605118 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00113 Car_Chr18 FPKM 10.917343 9.207359 46.692276 47.141785 22.709957 24.149319 21.731102 23.75572 25.307501 28.238354