Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00116 ATGAGAGAGCTAGATAGCAACATCGTTGGGGCTAAGCTGCTGCTGCTGCTGCTGATATTTGCTTTTGCTATCATTTTTCCATCCCTTGAGGCTGGTATTGCAGATTTTGATGAAGTATGGCAGCAAAGAGCTCAAGAAGCCAAAAAGGCTGCCTTGGAGGCCTACCAACCCCGTCCTGAAGAGGTCACTGAGAGTTTCAATGAGCATGTTAACGGAGACTTAGATGATGCAAATAACACAAGGAGACATTTGAGGAAATACAATGGTCCATGTTTAGCTACAAATCCAATTGATAGATGCTGGAGATGTGACAAAAACTGGTCTAAAAACCGTAAGAAGCTAGCTGATTGTGCGCTCGGGTTCGGCCGAGGAACAACAGGAGGCAAAAATGGAAGATTTTACATCGTTCAAGATTCGAGCGATAACGACATGCTTCATCCTAAACCCGGAACTCTCCGCTATGCCGTGATCCAAGACAGACCACTTTGGATTACATTTGCACATGACATGGTGATCAGGCTAGCTGAAGAGCTTATAATGACTGATAACAAGACATTAGATGGACGTGGTGCCAATGTCCATATAGCTAATGGTGGTCAAATTACTTTGCAATTTGTGAAGAACATAATCATCCATAATTTGCATATTCATGACATCAAAGCTGGCAATGGAGGTCTTATTCGAGACTCGGTGAACCATTACGGGATTCGAACACGGAGTGATGGTGACGGGATCTCCATGTTTGGAGCTTCGAATGTTTGGATAGATCATGTTTCGATGTCTAATTGTCAAGACGGACTAATCGATGCAGTCATGGCGTCGACTGCTATTACCATTTCGAACTGCCATTTCGCTCACCATAACGATGTGATATTATTAGGGGCAAGTGATAGCCACTCGGATGACCAGATTATGCAGGTAACGCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAGAGGATGCCTAGATGCCGATGGGGGTTCGTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTATGCCATCGGTGGCAGCCGCAACCCCACCATTATCAGCCAGGGGAACCGTTTCATTGCCCCACCAGACCCAAATTGCAAAGAGGTAACAACAAGTTTCACTTGA 1131 44.83 MRELDSNIVGAKLLLLLLIFAFAIIFPSLEAGIADFDEVWQQRAQEAKKAALEAYQPRPEEVTESFNEHVNGDLDDANNTRRHLRKYNGPCLATNPIDRCWRCDKNWSKNRKKLADCALGFGRGTTGGKNGRFYIVQDSSDNDMLHPKPGTLRYAVIQDRPLWITFAHDMVIRLAEELIMTDNKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLIRDSVNHYGIRTRSDGDGISMFGASNVWIDHVSMSNCQDGLIDAVMASTAITISNCHFAHHNDVILLGASDSHSDDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSRNPTIISQGNRFIAPPDPNCKEVTTSFT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 623998 626218 - Carg06681-RA Car18g00116 165818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00116 376 Pfam Pectate lyase, N terminus 33 84 IPR007524 GO:0030570
Car18g00116 376 Pfam Pectate lyase 180 360 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00116 Car-Chr18:623998 Car17g00103 Car-Chr17:607458 7.40E-147 dispersed
Car14g00546 Car-Chr14:2999530 Car18g00116 Car-Chr18:623998 0 wgd
Car18g00116 Car-Chr18:623998 Car04g01674 Car-Chr4:9637243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00116 K01728 - csv:101218812 637.491