Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00123 ATGGGGAAGGATTACTATAACATTCTGAAAGTGAGTCGAAGCGCTAGCGATGAAGATTTGAAGAGAGCTTACAAGAGATTAGCGTTGTTTTGGCATCCAGACAAGAACCCAGCAAACAAACAAGAAGCTGAGGCCAAGTTCAAGCAAATTTCAGAGGCTTATGATGTTCTTAGCGATCCTCAGAAGCGTCAGATCTACGACCTTTACGGCGAAGAAACCCTCAAGTCCGGTAAGATTCCACCGCCTACACCTCAAGCGACGTCCTCCTCCACGTATACTCCGGTTTACCAGCATTTTCAACGCCAGCATCCTAATACTTCGACATTTAAGTTTAAACCTAGGAATGCGGATGATATTTACGCCGAATTTTTTGGATCGGAGGGTGGTGGAGGGAGTAATAGCGAGGGGGGAGGGAAGGGCAGAGGGGCTAGGGATGCGTTTTTTAGGTTTCAGAATGGGACGGAGAATGGGAGTGGTGCTCGTGGGAGGAAGGCTGCTGCTGTTGAGAATACGTTGCCTTGTAGCTTGGAGGAGCTCTACAAAGGCGCTAAGAAGAAGATGAGGATTTCGAGGAACGTGTATGATGCCTCTGGCAAGTCCCGGACGGTTGAAGAGATATTGACAATTGATATAAAACCCGGGTGGAAGAAAGGGACAAAGATTACTTTTCCTCAGAAGGGAAATCAGGAGCCAGGCATCATTCCCGCAGATCTTATATTCGTAGTGGATGAGAAACCACATGCTATATACCGGAGGGATGGGAATGATCTACTAGTGAACCATGAATTAACATTGCTGGAATCACTCACAGGTAAAACTCTTGAACTTACTTCTCTGGATGGAAGGAATCTTATGATCCATATAACAGATATTGTCAAACCTGGTGATGAGATGGTTCTGGCAAATGAAGGAATGCCAATCTCTAAGGAACTTGGGAAGAAGGGAAATTTGAGAATCAAGTTTGATGTCAAGTATCCATCAAGGCTTACAACAGAACAGAAGTCTGATCTGATAAGAGTTCTCGGTGTAGTTTCGTAG 1038 45.18 MGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPANKQEAEAKFKQISEAYDVLSDPQKRQIYDLYGEETLKSGKIPPPTPQATSSSTYTPVYQHFQRQHPNTSTFKFKPRNADDIYAEFFGSEGGGGSNSEGGGKGRGARDAFFRFQNGTENGSGARGRKAAAVENTLPCSLEELYKGAKKKMRISRNVYDASGKSRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGIIPADLIFVVDEKPHAIYRRDGNDLLVNHELTLLESLTGKTLELTSLDGRNLMIHITDIVKPGDEMVLANEGMPISKELGKKGNLRIKFDVKYPSRLTTEQKSDLIRVLGVVS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 664567 667772 - Carg06688-RA Car18g00123 165825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00123 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 335 IPR008971 GO:0006457|GO:0051082
Car18g00123 345 Gene3D - 246 343 - -
Car18g00123 345 CDD DnaJ 4 59 IPR001623 -
Car18g00123 345 SUPERFAMILY Chaperone J-domain 3 78 IPR036869 -
Car18g00123 345 SMART dnaj_3 3 62 IPR001623 -
Car18g00123 345 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Car18g00123 345 PANTHER BNAA06G20720D PROTEIN 4 342 - -
Car18g00123 345 Gene3D - 166 245 - -
Car18g00123 345 PRINTS DnaJ domain signature 6 24 IPR001623 -
Car18g00123 345 PRINTS DnaJ domain signature 24 39 IPR001623 -
Car18g00123 345 PRINTS DnaJ domain signature 42 62 IPR001623 -
Car18g00123 345 PRINTS DnaJ domain signature 62 81 IPR001623 -
Car18g00123 345 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Car18g00123 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 169 247 IPR008971 GO:0006457|GO:0051082
Car18g00123 345 CDD DnaJ_C 168 329 - -
Car18g00123 345 Pfam DnaJ domain 4 67 IPR001623 -
Car18g00123 345 MobiDBLite consensus disorder prediction 124 144 - -
Car18g00123 345 Gene3D DnaJ domain 2 137 IPR036869 -
Car18g00123 345 Pfam DnaJ C terminal domain 169 326 IPR002939 -
Car18g00123 345 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 4 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00123 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101215798 586.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00762 Car18g00123 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01119 Car-Chr3:9072432 Car18g00123 Car-Chr18:664567 1.37E-18 dispersed
Car06g00695 Car-Chr6:4215167 Car18g00123 Car-Chr18:664567 2.43E-16 dispersed
Car11g01484 Car-Chr11:11986595 Car18g00123 Car-Chr18:664567 1.88E-131 dispersed
Car14g00047 Car-Chr14:280238 Car18g00123 Car-Chr18:664567 1.15E-108 dispersed
Car16g01073 Car-Chr16:9229223 Car18g00123 Car-Chr18:664567 8.55E-17 dispersed
Car18g00123 Car-Chr18:664567 Car20g00561 Car-Chr20:3086041 1.92E-78 dispersed
Car18g00608 Car-Chr18:7140477 Car18g00123 Car-Chr18:664567 7.20E-06 transposed
Car13g00762 Car-Chr13:8581619 Car18g00123 Car-Chr18:664567 2.43E-133 wgd
Car18g00123 Car-Chr18:664567 Car04g01662 Car-Chr4:9564903 5.15E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00123 Car_Chr18 FPKM 42.828381 43.943047 35.22295 35.006977 56.001446 58.834118 54.286751 31.390007 31.135784 29.711924