Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00138 ATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACATCACACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAACCATGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTACAGTTGGAATGGGTTTGGGGCAATTCCTAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATACGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAAGTCAAGAATGAGCCTATTGTTCTTCCAGAGTCGAAAAAAAGGGCATTTGGAACGGACGTAACAAATGTCAGTTATAAGAAAACTAAGACTGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTTAACATTCAAAAGCCAGTGCCGTGTGAGAATTCATCACAAGATGACAGCCAGAACAGTCAGGATCAGGAATGTGAGCGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACGTGAGGCGAACTCATGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAGTATCACAACCAAGGTAAAGCCCCTAATTAA 1074 43.3 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNIQKPVPCENSSQDDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVRRTHDWESLSSTFRPQYHNQGKAPN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 741325 744287 + Carg06703-RA Car18g00138 165840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00138 357 MobiDBLite consensus disorder prediction 286 309 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 1 21 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 1 16 - -
Car18g00138 357 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Car18g00138 357 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Car18g00138 357 MobiDBLite consensus disorder prediction 131 148 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 336 357 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 333 357 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 106 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00138 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 645.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00143 Car18g00138 CCT
Car13g00748 Car18g00138 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00138 Car-Chr18:741325 Car07g00815 Car-Chr7:4316011 1.49E-11 dispersed
Car10g00143 Car-Chr10:685152 Car18g00138 Car-Chr18:741325 1.25E-07 wgd
Car13g00747 Car-Chr13:8510450 Car18g00138 Car-Chr18:741325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00747 . 3 360 E2F-DP Transcription Factor Family AT3G48160 54.6 1.2e-95 347.4
Car18g00138 CCT,CST 3 352 E2F-DP Transcription Factor Family AT3G48160 54.9 2.7e-92 336.3
Car02g01097 CST 55 475 E2F-DP Transcription Factor Family AT2G36010 55.5 8.3e-120 427.9
Car03g01015 CST 11 459 E2F-DP Transcription Factor Family AT2G36010 52.1 1.7e-109 393.7
Car07g00815 CST 367 749 E2F-DP Transcription Factor Family AT2G36010 54.8 1.8e-98 357.1
Car02g01097 CST 58 482 E2F-DP Transcription Factor Family AT5G22220 56.5 3.3e-113 406.0
Car03g01015 CST 50 446 E2F-DP Transcription Factor Family AT5G22220 50.4 8.6e-90 328.2
Car07g00815 CST 397 757 E2F-DP Transcription Factor Family AT5G22220 53.8 3.7e-85 312.8
Car20g00133 CST 10 292 E2F-DP Transcription Factor Family AT5G22220 53.8 1.6e-59 227.6
Car05g00249 CCT 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Car02g01097 CST 173 449 E2F-DP Transcription Factor Family AT1G47870 50.9 5.8e-63 238.8
Car02g01097 CST 58 482 E2F-DP Transcription Factor Family AT5G22220 56.5 3.3e-113 406.0
Car03g01015 CST 50 446 E2F-DP Transcription Factor Family AT5G22220 50.4 8.6e-90 328.2
Car07g00815 CST 397 757 E2F-DP Transcription Factor Family AT5G22220 53.8 3.7e-85 312.8
Car20g00133 CST 10 292 E2F-DP Transcription Factor Family AT5G22220 53.8 1.6e-59 227.6
Car02g01097 CST 55 475 E2F-DP Transcription Factor Family AT2G36010 55.5 8.3e-120 427.9
Car03g01015 CST 11 459 E2F-DP Transcription Factor Family AT2G36010 52.1 1.7e-109 393.7
Car07g00815 CST 367 749 E2F-DP Transcription Factor Family AT2G36010 54.8 1.8e-98 357.1
Car05g00249 CCT 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Car02g01097 CST 173 449 E2F-DP Transcription Factor Family AT1G47870 50.9 5.8e-63 238.8
Car13g00747 . 3 360 E2F-DP Transcription Factor Family AT3G48160 54.6 1.2e-95 347.4
Car18g00138 CCT,CST 3 352 E2F-DP Transcription Factor Family AT3G48160 54.9 2.7e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5130 PF02319 E2F_TDP 4.60E-20 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00138 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0