Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00138 ATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACATCACACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAACCATGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTACAGTTGGAATGGGTTTGGGGCAATTCCTAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATACGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAAGTCAAGAATGAGCCTATTGTTCTTCCAGAGTCGAAAAAAAGGGCATTTGGAACGGACGTAACAAATGTCAGTTATAAGAAAACTAAGACTGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTTAACATTCAAAAGCCAGTGCCGTGTGAGAATTCATCACAAGATGACAGCCAGAACAGTCAGGATCAGGAATGTGAGCGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACGTGAGGCGAACTCATGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAGTATCACAACCAAGGTAAAGCCCCTAATTAA 1074 43.3 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNIQKPVPCENSSQDDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVRRTHDWESLSSTFRPQYHNQGKAPN 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 741325 744287 + Carg06703-RA Car18g00138 165840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00138 357 MobiDBLite consensus disorder prediction 286 309 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 1 21 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 1 16 - -
Car18g00138 357 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Car18g00138 357 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Car18g00138 357 MobiDBLite consensus disorder prediction 131 148 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 336 357 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 333 357 - -
Car18g00138 357 MobiDBLite consensus disorder prediction 106 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00143 Car18g00138 CCT
Car13g00748 Car18g00138 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00138 Car-Chr18:741325 Car07g00815 Car-Chr7:4316011 1.49E-11 dispersed
Car10g00143 Car-Chr10:685152 Car18g00138 Car-Chr18:741325 1.25E-07 wgd
Car13g00747 Car-Chr13:8510450 Car18g00138 Car-Chr18:741325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5130 PF02319 E2F_TDP 4.60E-20 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00138 K09391 - csv:101219210 645.58