Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00154 ATGGCAAAGCCCGGCATCGATGGCGGAGCTTCGATCAAACTCGATCGTAAAATCGTCGAGAAAAACCGAAGAATTCATATGAAATCGCTGTGTTCTAAGCTCTTCAATCTTGTTCCTTCCTCCCATTACAAAATTTCTAAGGATTTGCTATCCCAACAGACCCAAATCTCATACGTGATTGCTTACATAAAAGAGCTGAAAGAAAGAGTGGAGAGTTTGGAGAAAAGGAAGGAAGCTTTACAATTACAAATTCATTCTCAATTGCCAACTTCTAGTGATTCTACATTTCCTATAGTTGAGGTGAGAGAATTGTGTAGTGGGATCGTTCACGTAACGTTGATTAGCAGTGTTGATCGAAACGTCATGCTTAATGAAATCATTGGTGTCGTTGAAGAGGAAGGTGGTGAAGTTGCTAAAATTTCTAGGGTTGGAATAGAGACGTCGAGAGTAGAAAAAAGATTGAAGCATTTGATAATTGAAGCTCGAGAAGATGGACGAGATAAGTAA 507 39.45 MAKPGIDGGASIKLDRKIVEKNRRIHMKSLCSKLFNLVPSSHYKISKDLLSQQTQISYVIAYIKELKERVESLEKRKEALQLQIHSQLPTSSDSTFPIVEVRELCSGIVHVTLISSVDRNVMLNEIIGVVEEEGGEVAKISRVGIETSRVEKRLKHLIIEAREDGRDK 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 831274 832373 - Carg06720-RA Car18g00154 165856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00154 168 Coils Coil 63 83 - -
Car18g00154 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00154 - - - cmax:111489950 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00154 Car-Chr18:831274 Car18g00350 Car-Chr18:2154171 9.00E-07 dispersed
Car18g00154 Car-Chr18:831274 Car11g01572 Car-Chr11:12486613 3.99E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g729 . . . . . Bpe13g00224 Bma06g00229 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0110 . . Lsi02g00364 Csa01g00841 Chy12g01276 Cme12g01703 . . Bda11g01637 . . . . . Sed08g2498 . . . Cma18g00161 . Car18g00154 . . Bhi08g01595 Tan05g2021 Cmetu12g1885 Lac10g0437 Hepe07g2234 . . Cla01g01291 Cam01g1438 Cec01g1473 Cco01g1453 Clacu01g1358 Cmu01g1261 Cre01g1272 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010270 3 1 0 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00154 Car_Chr18 FPKM 5.802024 7.134976 7.208902 7.194657 3.876978 3.001183 3.527387 15.134617 14.241779 14.063452