Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00159 ATGGGTCTTACTTCTCTTCAAGTCTGCATGGACTCCTCTGATTGGCTACAACAGGGAAGTGGTAACGAGGAGTCTGGCATGGATTGTTCGTCATTATCAGGGGACATGCTGTCATGTTCAAGGCCACTGACAGAGAGGAGGCTGAGGCCTCAACATGACCAAGCACTGAAATGCCCAAGATGTGACTCAACTCATACCAAATTTTGTTACTACAACAACTACAGCCTCTCTCAGCCTCGCTACTTTTGCAAGACTTGTCGTCGGTACTGGACCAAAGGCGGCACTCTCCGCAACATCCCAGTCGGCGGTGGTTGCAGGAAGAACAAGAAAGTTACTACTACTAAGAAATCCAATAATGACCCGATTCATCATCAACAACAACAACAACCACGACAACCTATTTCCCAGATCCATCATCATCATCATATAGCGTCTTCTTCTTCTTCTTCCCTTCATAATCATAATCACAATCACACTGATCTTCATCTCTCGTTTTCAAATCAAGTACACTTCCCCTCTCAGTTCAATCCCCTTATTGGAACACCAAATTTCATCTCAAGCATAGGAATGCTTGAAGCTCACCATCACACCGCTCGACCAATCGACTTCATGGACTCCAAAATGGAAGCCCTTGTTGGCAATGCTCATTACAACCCCACAAACTCTGACCATTTGGCCATGGTGGGTGGGTTTGCTGGAGATCACATTGCCGCTGCTGGCCATGCTTTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGACTCTCACTTGATGGGAACGCGGCAGGCATGGGACAAGGAGTGATGATTCCTTATGAACATGAACAAAATGAGGATCCAAATGCAATGGAAGTGAAGCCGAATACAAAGCTTTTGGCTTTGGAATGGCAAGATCAGGAGGGATGTTCTGAGAAAGTTGAGTCCTATGGATTTATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATACGGATCATCAACAACGAACCCATTGGTCTAA 1011 45.99 MGLTSLQVCMDSSDWLQQGSGNEESGMDCSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVTTTKKSNNDPIHHQQQQQPRQPISQIHHHHHIASSSSSSLHNHNHNHTDLHLSFSNQVHFPSQFNPLIGTPNFISSIGMLEAHHHTARPIDFMDSKMEALVGNAHYNPTNSDHLAMVGGFAGDHIAAAGHALSPSFHGLCSPYGLSLDGNAAGMGQGVMIPYEHEQNEDPNAMEVKPNTKLLALEWQDQEGCSEKVESYGFINGIGSSWNGMMNGYGSSTTNPLV 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 866683 867842 + Carg06725-RA Car18g00159 165861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00159 336 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Car18g00159 336 MobiDBLite consensus disorder prediction 107 159 - -
Car18g00159 336 MobiDBLite consensus disorder prediction 118 159 - -
Car18g00159 336 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Car18g00159 336 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00205 Car18g00159 CCT
Car10g00264 Car18g00159 CCT
Car13g00729 Car18g00159 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00159 Car-Chr18:866683 Car20g00402 Car-Chr20:2280106 1.74E-38 dispersed
Car13g00729 Car-Chr13:8422383 Car18g00159 Car-Chr18:866683 1.47E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5131 PF02701 zf-Dof 1.80E-33 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00159 - - csv:101223232 474.167