Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00160 ATGGAAGACCCCAAAACCCCAGAAACCCTAGAAGCTCAAAGCCCTGTGAATGAGATTAGCGAGGATATTTCTGGTTTTTCTGGTTTGGTTGACTTGAGCGGTGGGTTAACTGTGGAGATTCCGGTTGTTGAGAATGTCAATGGCGTAGCGGTTAGTAATGTCGAATTGAGGATTGAGGAGGATGAAATGGGAATTGGCAGTTTAGAGGGAGAAATTTTGGATGCTGGTGGAGATGAAGACGGTGGTGATGGTGTTGGGGCTGAGAATGATCAGAACAATGGCAACGCGGTGGAATTAGACGGTCTTCCTACAGGGAAGAACGTCGAAGTTTCTGGCGATGGTATATCGCTTACAGTGGACGTCTCGAATGTTCAGCCAGAAGAACCAGAGCTTCCCAAGTCAATAGGAATGGAAGAAATTTCGAAAGAAGCTGGAGATGAAAAGCAGGTTATTGAAAATGGCGACGAGAACAAATTTTCAGTTGGTGATGTAATATGGGTCAAGACCAAAAGTCAGACATGGTGGCCTGGAAAGATACATCCCTCAGATGCAGTAGAAAGTGACGCAAGTAGCCAGAGTGATAGTCTTTTAGTTGGCTATTTTGGGAGCAGCCATGTGACATGGTGCTCTACATCTCAGTTGATGCCCTTTGCTGAGAACTTTGAGCAGATGTCCGGGAAGTACAAGTCTCGAAGTTTCCTTGGGGCTGTAGAGAAAGCTGTGGATGAGTTTGGTAGGTGTGTGAGGTTGGAGATGACATGTCCGTGTATTCCTGAAGGAAACTGCCCATTAGAAGGTGATGATGGATCAAAGGATGCAACTTCTCTGCCTCGGCGCAAGTCTGGTTTCCTTGCTAAATATTCTGTTGATCAGTATAAACCCGAAACATTCCTAGCACGTGTTAAGAGTCTTGCGCAGATTGTTTCCCTATGTGGAACACTAGAGTTGAGTATCCTGTATAATCAATTGGCAGCTTTTCAAAGCTCAATAGGGCACCTGCAGTTACCTTTGCATCTGCTCTGGGAAACTCATGATGCTGACGACAATGTGGCGAGCAGATCAGTGAGAAAAAGCAAAACTCGTGTTACAGTGAAAAATGATGAAGAACAGGTAGAAGATGGCACACAAAGCTCACCGTTAGAGACACTGCCCATAGGATCAGACATTCTACATGAAAAGATGGAGGGAAAGATTGACGATCCAAATAAGGTGCTCGACGGAAGCATGGAAGGAGGGAAAAGGAGCTCCAGAAGAAAGACAATTGCTGATGGAGGAATTGAATCGAGATCGTTAAAAAGAAAAAGAAGTGACAAATTTGAAGATCTTGAATCCAGCAAAATGGATTCTTCTATCAAGGGAGAGGTGATCAATCCCTTAGCTTATGAAGCCAAGGATTCTGATGTAGGAGACTTCGATGATGGGAGCAAAGGGATGTCCGAAAAGAGATCGGAGACAAGAGAGAGGAAGAAGAGCAAGTATTTATCTTTTCCATACATAAACTGGGGGCCGAAAAGTATGCCAGCTGACACAGAAGGTATTAAGGCGCTTAAAATTTCTAGCGAAGGTGAGGATGAAAGTGAAGCTGAGGGCAAGAATGAAAGCCCTTTACTATCTAAATGCAGTGGCAAGTTCTGGAAGAAGTGGTACTGGAATATCACCAGTGGCAGTGATGTTGCTGGTAATCAAGAGTTGATGAGTGTATCACCAGCTGAATTTCTTTCTGAGCTTCATTTTACTGCTGTGAATTGTCTTTATCCAAATGAAAGTAATAACTTTGATGCGGTCGCTCAGTTCTTCTCAAGATTTAGAATTCTCACGTTTCATGATGAATCTGTCGACACTGGTCAAAATGAGGCAAAGACTGCTGAGGTTAAGCATCCTTCTTCTACTGCTAAATCAGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATCTCGGAAATGGAAGAGATTAAGCATCCTTCTTCTACTGCTGAAGTATATCCTGCAGGAGAGGCACAAAAAAAGACCCCTCTGTCGAAAAATGATGGAGAAAGCTTGGGGAGATTGAAGACTAAATCCCTTTCTGCCTTGTCCGATGTGAACATAAACATTTCTTCGAGTAGCCCGCTTACAAAAGACTCGCCTGAGATTGGACCTGAACCACTCTCACCCAATGGTTTACCAAAGCGAAGGAAGAGAAAGAACGATGGATCGCTTCTCCAGAGTAAACCAACAACTGAGATACCTGATTTAAATGGAAGTGGTTCGGCACCTGCCTTGTTGGTGGAAGATCAGCGGGCTGCGAGCCAGGTTGCTTCCCAACAAAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGTGCTGTTAAGGAGCATTCAAAGGTGTCTTCTGAATCCATAGATGCGAATAACAGCAATGAACCTGGTTCCTTTTTCATTGATCTACAGGTCACAGTTCCACAACCACTTGGTGTGATTTCAGAGAAAAATAAAGTGGATTTTGAAGGAGCGCCTAACCAGTCTGTGGAGGAGCAGACAATTGCCCAGGATCAGAGCAAGTCGGGGGTCAAAAGGCGAAAGAAGAAGGAGAACCCGCCATTGACAGATCCGAAGGTAATCTTGCCTTCTGATATACCAGATTTAAATGGAATGGGTATTGAATCTAGTCAGGGGAAAGACTCCCAGTTGACTAAACCAAAGAGGAGGAGGAGAAAAGGTGAAGCTAGTTTGAACGATCCGAATCCTTCTGACAAACCATATATTTATAATAAAGTTGAAACTGATGGTGATGGTTTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCGCCCTTACCTCCCCGGCAGCAAGTTATCACAACGTTTAGCCAGTTCGGATCTTTGAAGGAATCCAAGATACAGTTGAAAGATTCAACTGTTGAGATAGTTTTCCTTCGAAGTGCGGATGCAATGGAAGCAGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTTTAAAATACCAGCTCTATCACCTCTCAACTCCCCCAAAAACGTCGGACGTGGACAGGGCTTGCACAGCACTGGCCTATCCAGCATCTGAGGGCACTCTCAACTCATCAAAGTCTGCTGAATCAGGATCTCAATCAGCAGGTGAGGCACAGCCTGTCGAGTTTATTAGGAAGAATCTTCAGATGATGACATCAATGCTGGAGAAGTCCGGAGACAATCTCTCCCCAGACACGAGAGCCAAATTGGAGAGCGATATTGAAGTCCTCCTCAAGAAGGTGAGTTCCATGGCGGGTTCTTCCTCAACGTAA 3288 44.4 MEDPKTPETLEAQSPVNEISEDISGFSGLVDLSGGLTVEIPVVENVNGVAVSNVELRIEEDEMGIGSLEGEILDAGGDEDGGDGVGAENDQNNGNAVELDGLPTGKNVEVSGDGISLTVDVSNVQPEEPELPKSIGMEEISKEAGDEKQVIENGDENKFSVGDVIWVKTKSQTWWPGKIHPSDAVESDASSQSDSLLVGYFGSSHVTWCSTSQLMPFAENFEQMSGKYKSRSFLGAVEKAVDEFGRCVRLEMTCPCIPEGNCPLEGDDGSKDATSLPRRKSGFLAKYSVDQYKPETFLARVKSLAQIVSLCGTLELSILYNQLAAFQSSIGHLQLPLHLLWETHDADDNVASRSVRKSKTRVTVKNDEEQVEDGTQSSPLETLPIGSDILHEKMEGKIDDPNKVLDGSMEGGKRSSRRKTIADGGIESRSLKRKRSDKFEDLESSKMDSSIKGEVINPLAYEAKDSDVGDFDDGSKGMSEKRSETRERKKSKYLSFPYINWGPKSMPADTEGIKALKISSEGEDESEAEGKNESPLLSKCSGKFWKKWYWNITSGSDVAGNQELMSVSPAEFLSELHFTAVNCLYPNESNNFDAVAQFFSRFRILTFHDESVDTGQNEAKTAEVKHPSSTAKSGIKKRKSQASSISEMEEIKHPSSTAEVYPAGEAQKKTPLSKNDGESLGRLKTKSLSALSDVNINISSSSPLTKDSPEIGPEPLSPNGLPKRRKRKNDGSLLQSKPTTEIPDLNGSGSAPALLVEDQRAASQVASQQKSEPKKRRKLGAVKEHSKVSSESIDANNSNEPGSFFIDLQVTVPQPLGVISEKNKVDFEGAPNQSVEEQTIAQDQSKSGVKRRKKKENPPLTDPKVILPSDIPDLNGMGIESSQGKDSQLTKPKRRRRKGEASLNDPNPSDKPYIYNKVETDGDGLGSLLLLTFSSEAPLPPRQQVITTFSQFGSLKESKIQLKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSTPPKTSDVDRACTALAYPASEGTLNSSKSAESGSQSAGEAQPVEFIRKNLQMMTSMLEKSGDNLSPDTRAKLESDIEVLLKKVSSMAGSSST 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 869626 872913 - Carg06726-RA Car18g00160 165862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00160 1095 MobiDBLite consensus disorder prediction 351 383 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 696 803 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 1025 1045 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 613 681 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 465 486 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 770 790 - -
Car18g00160 1095 Pfam PWWP domain 162 243 IPR000313 -
Car18g00160 1095 ProSiteProfiles PWWP domain profile. 161 220 IPR000313 -
Car18g00160 1095 MobiDBLite consensus disorder prediction 1025 1042 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 829 913 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 351 372 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 398 448 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 846 860 - -
Car18g00160 1095 MobiDBLite consensus disorder prediction 621 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00160 - - - cmax:111490244 2002.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00728 Car18g00160 CST
Car13g00876 Car18g00160 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01134 Car-Chr14:10001597 Car18g00160 Car-Chr18:869626 2.82E-15 dispersed
Car13g00728 Car-Chr13:8417047 Car18g00160 Car-Chr18:869626 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g374 . . . . . . . . . Cmo18g00024 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0002 Cone19ag0003 Lsi02g00159 Csa01g00644 Chy12g01458 Cme12g01898 . . . Bda14g00908 . Bpe15g00550 Bma03g00883 . Sed08g2161 . . . . Car13g00876 Car18g00160 . . Bhi08g01195 Tan05g2296 Cmetu12g0160 Lac10g0211 Hepe07g2418 . . Cla04g01114 Cam04g1167 Cec01g1678 Cco01g1726 Clacu04g1195 Cmu04g1174 Cre01g1473 . . . .
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00160 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0