Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00161 ATGGCTAGTCCTGTGGATAACCTACACCCTGAAATTCGTCGTATAAAGGGAGATGGTCAGCAAGCTGAGGATAAAAACCAGCATGTTGAGAAAGAGGGCGGCCTGAGTGGTGGTGAGAGGGACATGGCTCCGGTTACTGGCAATTCCATCCATAGGTCTGGTTCTCGCCCACAGCTAGACCTCAGTAAAGCTGCAATTCAGGGCAATTTCGAGGAGAGAGACCCTACAATTCTTCTGCCTAACCAGTCTGATGATATATCTCACCTGGCTCTTGATATCGGCGGATCTCTCATCAAATTGGTTTACTTTTCAAGGCATGAAGATCAATCGGTTGATGATAAGAGGAAGAGGAGCATGAGGCAGAGGCTGGGGTTCTCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTGAAGTTTGAGACATGCAAGATTAACGAGTGCTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTAGCAACAATTTACCTCGTTGGCATTCAGATGGCTCAACAAATGAAAATGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGACCTTTTTAAAGAAAGACTTGGAGTTAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTAAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTCGTGCAACTTGACCATAATGAATTATTTCCCTATCTACTTGTTAACATTGGATCGGGTGTCAGCATGATCAAGGTTGATGGCGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGTACCTACTGGGGTTTAGGAAGGCTGTTAACAAAATGTAATAGCTTTGATGAGTTGTTAGAGCTTACTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCTAAGATTGGTCTTTCTGCGTCAACAATTGCATCAAGTTTTGGCAAGACCATCTCAGAGAGCAAGGAGCTTGAGGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAATATTGGTCAGATATCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATCTTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCCTTTGCGGTCCACTTTTGGTCAAAAGGAGAAGCACAAGCAATGTTTTTGCGTCATGAAGGGTTCTTGGGTGCCTTAGGTGCATTCATGAGCTACGAAAAGCATGGTCTCGATTATCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCTATGGGTGCACCATATACAGGAGGGAGAGTTCATGGGCCTCCACTTGGTGATTTGAATGAAAAGATTTCTTGGATGGAGAAATTTGTGCAGAAGGGAACTGAAATAACTGCGCCTGTTCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGGGACCCTGCGATCTGATGCAAGTGCCCTAAACGTTGGTGTTCTCCATCTAGTACCCAATTTGGAGGTGTTCCCTCTGTTGGCTGATCCAAAAACATATGAACCTAACACTATTGATCTCTCTGATCACCGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGATCATTTACCAGATCTTGTGGATAAGGCTGTTGCAAGCGAAGGTGGAACTGATGATGCCAAGAGAAGAGGTGATGCATTTGCTCGGGCATTTTCGGCCCACTTGAGGAGGTTGATGGAGGAACCTACAGCATATGGAAAATTGGGTTTGGCTAATCTACTGGAACTGAGGGAAGAGTGCTTGAGGGAGTTCCAATTTTTTGATGCCTATAGAAGCATAAAACAGAGGGAGAATGAGGCATCACTTGCTGTTTTACCTGACCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTTCTGACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCCTGTGTCGATCTCTATCACAAGGGGACAATAATCGAGATTTACAAAATGAGTCGCAATAAGATGCAGAGGCCGTGGCGGGTCGATGATTTTGATGCCTTCAGAAAAAGAATGTTAGGATCTGGGGATAAGAAACCCATTCCTCACAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCCTGGCGAGGGAACTCCTCCGACGTGGAACTGAAGTTGTTTTAATTGGAAACTCCCTTCCTGCCATAAATGATGTAACCGCAATGGAGCTTCCTGATATAGTAGTTGAGGCTGCCAAGCACTGTGACATACTACGTAGAGCTGCTGAAGCGGGCGGATTGATTGTGGATGCCATGGTTAACTCTGCGGATGGTTCTAAAGAGCATTCATCATCTGTTCCCTTGATGGTTGTCGAAAATGGCTGTGGTAGTCCATGTATAGATCTAAGGCAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGATGCTGATTTGGTTATCTTGGAAGGAATGGGGAGAGCCCTTCATACCAACTTAAACGCCCAATTTAAATGTGACGCTTTAAAGCTTGCCATGGTGAAAAATCAGAGGCTAGCAGAAAAATTGTTCAATGGACAGATATATGACTGTGTGTGCAAATACGAGCCATCACACTGA 2736 44.48 MASPVDNLHPEIRRIKGDGQQAEDKNQHVEKEGGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAAIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMRQRLGFSNGNRRSYPVLGGRLHFVKFETCKINECLDFIHSKQLHRGASNNLPRWHSDGSTNENAIIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELTQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISESKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDYLLAHQLVERFPMGAPYTGGRVHGPPLGDLNEKISWMEKFVQKGTEITAPVPMAPPGTTGLGGFEVPLSKGGTLRSDASALNVGVLHLVPNLEVFPLLADPKTYEPNTIDLSDHRELEYWFTVLSDHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYKMSRNKMQRPWRVDDFDAFRKRMLGSGDKKPIPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLIGNSLPAINDVTAMELPDIVVEAAKHCDILRRAAEAGGLIVDAMVNSADGSKEHSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNLNAQFKCDALKLAMVKNQRLAEKLFNGQIYDCVCKYEPSH 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 875161 885956 - Carg06727-RA Car18g00161 165863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00161 911 Gene3D - 547 632 IPR035073 -
Car18g00161 911 Pfam Damage-control phosphatase ARMT1-like domain 618 897 IPR002791 -
Car18g00161 911 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 712 909 - -
Car18g00161 911 PANTHER PANTOTHENATE KINASE 2 36 833 - -
Car18g00161 911 SUPERFAMILY Actin-like ATPase domain 202 435 IPR043129 -
Car18g00161 911 PANTHER PANTOTHENATE KINASE 36 833 IPR004567 GO:0004594|GO:0005524|GO:0015937
Car18g00161 911 SUPERFAMILY Actin-like ATPase domain 86 230 IPR043129 -
Car18g00161 911 Coils Coil 12 32 - -
Car18g00161 911 MobiDBLite consensus disorder prediction 1 60 - -
Car18g00161 911 PIRSF PanK_long 42 911 IPR015844 GO:0004594|GO:0015937
Car18g00161 911 Gene3D - 315 424 - -
Car18g00161 911 Pfam Fumble 88 433 IPR004567 GO:0004594|GO:0005524|GO:0015937
Car18g00161 911 Gene3D - 80 243 - -
Car18g00161 911 TIGRFAM panK_eukar: pantothenate kinase 88 434 IPR004567 GO:0004594|GO:0005524|GO:0015937
Car18g00161 911 SUPERFAMILY AF1104-like 527 909 IPR036075 -
Car18g00161 911 MobiDBLite consensus disorder prediction 9 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00161 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - csv:101203117 1670.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00161 Car-Chr18:875161 Car18g00726 Car-Chr18:8419582 1.74E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00161 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0