Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00173 ATGACGTTCTATCAGAAGCTCGACCTATCAATATCTGACGTCGCAAAGAAACTGACAGCTGGCAACATCCTTGGCCGTGGCCGATCCGGCGTCGTTTACCAGGTCAACATCCAGCCCGGTTTAACAATTGCCGTCAAACGGTTCAAGACATCGGAGAAGTTCGTCGCCGCCGCATTCTCCTCCGAAATCTCAATTCTAGCCAGTATCCGACATAGGAATATCATCCGGTTGCTCGGTTGGGCAGCAAATCGGAAAATGAAATTGCTATTCTACGACTACTGGCCACACGGAAGCCTTGGCGATCTGTTACACGAGCGGTGCTCTAGTGGATATGTAATCAGCTGGAATGCTCGGTTAAAGATCGCCATCGGCGTGGCAGATGGATTGGCTTACTTGCATCACGACTGCGTTCCCGCGATTTCGCATCGTGACGTGAAGGTCCAAAATATACTGTTGAGTGATGAATACGACGCGTGCCTCACAGATTTTGGATTCGCTAGATTCATTGAAGACAACCCGAACAACTCCTCGTCGGCCAATCCACAATTCGTCGGATCTTATGGCTACATTGCACCAGAGTATGGTCGCATGCTAAAAGTAACAGAAAAAAGCGATGTGTATAGCTATGGAATCGTACTTTTAGAGATGATTACCGGAAAAAAGCCTGCCGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAGCATCATCTATACAGCCAGAAAGATCCAATCGAGCTTCTGGACCCAAAGCTTACGATCCATCTCGACGCGGAAGTTCAAGAAATGTATCAAGTCCTCGAAATCGCTCTTCTGTGCGCCTATCATCGCGCCGATGATCGCCCGACAATGAAGGACGTTGCTGCATTATTGAGAGGAATTCGAACCGATTCAACAATGATGACGATCAAGGGCAACAAACGTAGTAATAGGCTAAAGAGATTCGAAATTCAGTCGTATTAG 972 47.43 MTFYQKLDLSISDVAKKLTAGNILGRGRSGVVYQVNIQPGLTIAVKRFKTSEKFVAAAFSSEISILASIRHRNIIRLLGWAANRKMKLLFYDYWPHGSLGDLLHERCSSGYVISWNARLKIAIGVADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFIEDNPNNSSSANPQFVGSYGYIAPEYGRMLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQHHLYSQKDPIELLDPKLTIHLDAEVQEMYQVLEIALLCAYHRADDRPTMKDVAALLRGIRTDSTMMTIKGNKRSNRLKRFEIQSY 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 957895 962018 - Carg06739-RA Car18g00173 165875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00173 323 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Car18g00173 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Car18g00173 323 Pfam Protein kinase domain 21 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00173 323 ProSiteProfiles Protein kinase domain profile. 18 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00173 Car-Chr18:957895 Car08g00911 Car-Chr8:6127187 3.10E-97 dispersed
Car10g00102 Car-Chr10:465567 Car18g00173 Car-Chr18:957895 1.23E-95 wgd
Car11g00076 Car-Chr11:405604 Car18g00173 Car-Chr18:957895 7.99E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89505 PF00069 Pkinase 4.50E-42 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00173 - - csv:101205934 553.518