Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00177 | ATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAGATTCCTAAGAAGAAAATGCATAGCAGGATGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTGCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTCGCATATGAAGCCGAGGCTAGAATAAAAGATCCTGTTTATGGCTGTGTTGGTGCCATTTCATGCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAGCTCGATGCAGCTAAAGCTCGTCTTTGTCTCTTCTCTTTCACTGACTTTTCAGCTCCCTTTTCATCTCAGCCTCAAATTATTAGCCCTCCTATGATTTGGAATAGTAACAATTATGATATCGTTTATGCTAATTCTTCTATGTATTTTAATGGAGGAATTTGA | 483 | 41.82 | MGSSSRTETSHYYSPCAACRFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPVYGCVGAISCLQKQVQRLQKELDAAKARLCLFSFTDFSAPFSSQPQIISPPMIWNSNNYDIVYANSSMYFNGGI | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 974033 | 974515 | - | Carg06744-RA | Car18g00177 | 165879 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00177 | 160 | Coils | Coil | 94 | 114 | - | - | |
| Car18g00177 | 160 | PANTHER | PROTEIN LATERAL ORGAN BOUNDARIES | 9 | 137 | - | - | |
| Car18g00177 | 160 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
| Car18g00177 | 160 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
| Car18g00177 | 160 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 9 | 137 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car11g00069 | Car18g00177 | CCT | |
| Car10g00093 | Car18g00177 | CCT | |
| Car10g00093 | Car18g00177 | ECH | |
| Car11g00069 | Car18g00177 | ECH | |
| Car13g00709 | Car18g00177 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car18g00177 | Car-Chr18:974033 | Car11g01652 | Car-Chr11:12991308 | 4.00E-47 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car18g00177 | Car-Chr18:974033 | 7.27E-63 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car18g00177 | Car-Chr18:974033 | 7.70E-59 | wgd | |
| Car11g01357 | Car-Chr11:11112461 | Car18g00177 | Car-Chr18:974033 | 1.11E-60 | wgd | |
| Car13g00709 | Car-Chr13:8335544 | Car18g00177 | Car-Chr18:974033 | 2.23E-96 | wgd | |
| Car14g00607 | Car-Chr14:3379792 | Car18g00177 | Car-Chr18:974033 | 1.18E-60 | wgd | |
| Car18g00177 | Car-Chr18:974033 | Car04g02589 | Car-Chr4:20334234 | 1.05E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5132 | PF03195 | LOB | 5.90E-41 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00177 | - | - | ahf:112722314 | 199.134 |