Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00182 ATGAGGCTGTATGTGTATGTATTGGAGGCTAAGAATCTCCTTGTGAAGGACTCGTTTGTGAAGCTACGGGTTGGGAGGCGTAAGGCTAAGACGAGGATTATGAGGAACTGTTCTAATCCTGTTTGGAATGAGGAGTTCATTTTTAAGTTTCGTGATGTGGATGAGGAACTGGTTGTTTCTGTTTATGAGCATAGTGATGAGTCCAGATTCTTCCATGGTTCATCGGGGTTGATTGGTCGGGTTCGGATTCCGATATGGATGGTTGCTGATGAGGATTCACAGACGCTGCCGCCCACTTGGTTTGATGTGCGAAGGTCTGGAACTGAGAAGTTCATCAATGAAGTTGCTGGGAAAGTGCTCCTTATTGTCTCATTACATGGGAAAGTCAATGTACTTAATCAATCAAGTGTTACTAATGCTAAACAATTGGAAGACTCGTCTGCCATTTCACAGGATTTGGTCGGCTCGAAATCTTCGTCCAGCAAGTCTATCAAAGGGAAGTTTAACAAGAAGAGCATCGTGACTCGATTGGAGAGACTGTTCCATAAGAGCGATGAGGATACAAGAACAGATAATTCTTCGGAGTTATCAAGTGGCATATCTGATAACGAAGAGCGCATAGACGAACATCCCTCGGAATGTAGCTTTGATGAAGCGATTGAGACGCTGCAGTCGAGGAGAAGTGAACAGGAAATGCCAGAGAATCTACTGGGCGGCGTTCTTGTCGATCAAGTGTATGTAGTTTCACCTGGTGATTTGAACAAACTTCTGTTTGCTCCAGATTCCAAGTTCAGGAGAGAACTAGCAGAACTTCAGGGAACAACAAATTTAGAAGAAGGAAACTGGTCTTGGAAGCAAGGGGACGTACCGTGTCTATCACGGATCGTTTCTTATCGAAAAGCTGCAACGAAGGTCGTTGGAGCTATTAATGCTACCGAGGAGCAAACCTACATCAAAGGGGACGGATGGGAATTCGCTGTCTTCGTAAACGTAAGTACACCTGAAGTTCCATTTGGTAATGCCTTCAATGTTGAGTTACTTTACAAGATAATGCCTGGTCCTGAGCTAACCTCTGGAGAAGAGACGTCCCATTTGGTAGTCTCTTGGGGCATAAACTTCCTCCATAGTACAATGATGAAAGGGATGATTGAAAAAGGCGTTCGACAGGGTATGGAGGAAAGTTTTGTTCAATTTACGAACGTGCTGGCACAGCATTTAAAAGTACCGAATTCAACCGAGTTACCGAACAAGGATCTTGTGTTGTCGAGATCTGAAAGTGACCGCCAATCGGATTTCGAATTGGCCCGAAAATACTTCTGGAACTTCACTGTAGTTTCTACCGTTTTCGTGCTGCTGTACATACTTGCGCATATTACGCTTTCTAAGTCCAAAACGATGCAAGGCTTGGAGTTCACTGGATTGGATTTGCCAGATAGTTTAGGAGAACTTGTTACTGGTGGGATTTTAGTTCTTCAATTGGAACGTGTTTATAAGATGGTCTCACATTTCATTCAAGCTAGGCTAAAAAGAGAAGGTGACCATGGTGTCAAAGGCCAAGGAAATGGATGGATACTAACCGTTGCTCTTATCGAAGGGGTGAACATTTCGTCCTTGGATTCTTCGGGTTCTTCGGACCCGTGTGTGGTTTTCACATGCAATGGTGAAAAAAGAACGAGCTCCGTTGAGCTTCAAACTCATGAGCCTCAATGGAATGAGATACTCGAGTTCGATGCTATGAAGGAACCCCCATCAGTATTATATGTGGAGGTTTTCGACTTCGATGGTCCACTCGACCAGGCTACCTCGCTCGGGCACGCAGAGATCAATTTCCTAAAATATAAATCAACTGAACTTGCAGATTTATGGGTTCCTCTTGAGGGGAAGCTTGCTCAGTCTTCTCAGTCCAAGCTGCACTTGAGAATCTTCTTAGATAATACCGATGGAGTCGAAACGATGAGACAGTACTTGTCTATGAAGGGAAAGGAGGTCGGGAAGAAGCTCCATCCAAGGTCGCCTTACAGGAACTCGACGTTTCAGAAACTTTTCGGGTTGCCAGCCGAAGAGTTTCTCGTCAGCGACTTCACTTGTTCCCTGAGAAGAAAAATGCTTCTTCAGGGAAGACTATTTCTATCTGCCAGAATCATTGGGTTTTATGCCAATATTTTTGGACAGAAAACAAAATTTTTCTTTCTTTGGGAGGACATTGAAGATATTCGAGTACTTCACCCGTCCCTCGCCTCTCTGGGTAGCCCGTCATTGGTTATAATCCTTAAAAAAGGTCGAGGTCTCGAAGCAAGTCACGGTGCTAAGATCCAAGACGAACAAGGAAGGCTCAGGTTTTACCTCCAATCATTTGTTTCATTCAATGTAGCCAGCAGGACGATTATGGGGATGTGGAGAACAAGAACGTCGACCCTCGATCAGAAAGATGGCAAGGTAGAGCACGGAGTGTACAGAACAATCAGGAACGACACGATAGCTCGAGGTAGAGCACGGAGTGTACAGAACAATCTGGAACGACACGATAGCTCGTGGGAATTCATGAGACCTGATATCACATTCGAAGTTACATTTCTACCCATCCAACACAGCATTCTGGCATTAGGAGGAGGTTGGGTTCGATTCTTGGCCGAGCCAGTCCGGGCGGAGAAATCCAACATTGGTTAG 2667 44.88 MRLYVYVLEAKNLLVKDSFVKLRVGRRKAKTRIMRNCSNPVWNEEFIFKFRDVDEELVVSVYEHSDESRFFHGSSGLIGRVRIPIWMVADEDSQTLPPTWFDVRRSGTEKFINEVAGKVLLIVSLHGKVNVLNQSSVTNAKQLEDSSAISQDLVGSKSSSSKSIKGKFNKKSIVTRLERLFHKSDEDTRTDNSSELSSGISDNEERIDEHPSECSFDEAIETLQSRRSEQEMPENLLGGVLVDQVYVVSPGDLNKLLFAPDSKFRRELAELQGTTNLEEGNWSWKQGDVPCLSRIVSYRKAATKVVGAINATEEQTYIKGDGWEFAVFVNVSTPEVPFGNAFNVELLYKIMPGPELTSGEETSHLVVSWGINFLHSTMMKGMIEKGVRQGMEESFVQFTNVLAQHLKVPNSTELPNKDLVLSRSESDRQSDFELARKYFWNFTVVSTVFVLLYILAHITLSKSKTMQGLEFTGLDLPDSLGELVTGGILVLQLERVYKMVSHFIQARLKREGDHGVKGQGNGWILTVALIEGVNISSLDSSGSSDPCVVFTCNGEKRTSSVELQTHEPQWNEILEFDAMKEPPSVLYVEVFDFDGPLDQATSLGHAEINFLKYKSTELADLWVPLEGKLAQSSQSKLHLRIFLDNTDGVETMRQYLSMKGKEVGKKLHPRSPYRNSTFQKLFGLPAEEFLVSDFTCSLRRKMLLQGRLFLSARIIGFYANIFGQKTKFFFLWEDIEDIRVLHPSLASLGSPSLVIILKKGRGLEASHGAKIQDEQGRLRFYLQSFVSFNVASRTIMGMWRTRTSTLDQKDGKVEHGVYRTIRNDTIARGRARSVQNNLERHDSSWEFMRPDITFEVTFLPIQHSILALGGGWVRFLAEPVRAEKSNIG 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1003443 1008722 + Carg06749-RA Car18g00182 165884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00182 888 ProSiteProfiles C2 domain profile. 510 623 IPR000008 -
Car18g00182 888 MobiDBLite consensus disorder prediction 184 213 - -
Car18g00182 888 ProSiteProfiles VASt domain profile. 237 410 IPR031968 -
Car18g00182 888 Pfam GRAM domain 677 744 IPR004182 -
Car18g00182 888 Pfam C2 domain 523 625 IPR000008 -
Car18g00182 888 Pfam C2 domain 2 102 IPR000008 -
Car18g00182 888 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Car18g00182 888 Pfam VAD1 Analog of StAR-related lipid transfer domain 241 390 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00182 - - - cmax:111490252 1548.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00783 Car-Chr6:6040556 Car18g00182 Car-Chr18:1003443 2.96E-09 dispersed
Car18g00182 Car-Chr18:1003443 Car18g00587 Car-Chr18:6933034 0 dispersed
Car18g00182 Car-Chr18:1003443 Car13g00248 Car-Chr13:4590154 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00182 Car_Chr18 FPKM 18.480259 23.813274 35.19418 33.843533 31.816742 32.547749 32.331104 1.172833 1.01592 0.744005