Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00190 ATGGTACTCATTTACGCGGTCTCCTATGCCTGCACTGACCTGTTCTCTAGTCTCTTCTGTATCACTGCTTCTCCAAAATCTGGACAAGTTCTCAAAGCGGGTGTTGATAAAATCAGTGTGTCATGGGTTCTTAATGGAGCTGCAAAAGTTGGGTCGGATTTGGCTTACAAATCCGTGAAGGTGAAGCTCTGCTATGCGCCGGTGAGCCAAGTGGACCGTGCGTGGAGGAAAACAGAGGACGATCTTGCAAAGGACAAGACTTGTCAATTCCAAATCGTGGAGAAGCCGTACAATCCGTCGAACAAGACGGTTCAAAAGGCTGAGTGGACGGTGGAGCGTGACACTCCGACGGCGACTTTCTTCGTGCGTGCTTACGCGTTCAATTCCGCCGGCGATGAAGTGGCGTACGGACAAACGACAGACGAAAAGAAAGGCACAAATTTGTTCCAAGTTGAAGCTATCACTGGCCGCCATATCTCTCTCGATATTGCTTCTGGTTGTTTCAGCGCTTTCTCTGTGCTGTCTTTGACCGGATTCTTCATCGCCGGTAAGAGGCAGGCGAAGAAGGCGGCGGCGGCGGAGGGGCACTAA 591 51.1 MVLIYAVSYACTDLFSSLFCITASPKSGQVLKAGVDKISVSWVLNGAAKVGSDLAYKSVKVKLCYAPVSQVDRAWRKTEDDLAKDKTCQFQIVEKPYNPSNKTVQKAEWTVERDTPTATFFVRAYAFNSAGDEVAYGQTTDEKKGTNLFQVEAITGRHISLDIASGCFSAFSVLSLTGFFIAGKRQAKKAAAAEGH 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1045202 1045904 + Carg06757-RA Car18g00190 165892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00190 196 Pfam High-affinity nitrate transporter accessory, Ig-like domain 19 156 IPR016605 GO:0010167|GO:0015706
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00190 - - - cmax:111495476 285.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00612 Car18g00190 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00612 Car-Chr13:7846979 Car18g00190 Car-Chr18:1045202 7.12E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g847 . . Bda06g00619 . . . . Bma12g01057 Cmo13g00790 Cmo18g00158 . . . . . Cpe20g00344 . . . . . . . . . . . . . . . Cone2ag0936 Cone16ag0067 . . Lsi02g00423 Csa01g00891 Chy12g01232 Cme12g01656 . Blo15g00248 Bda11g01646 . Bpe07g00861 . . . Sed01g1616 . . Cma13g00760 Cma18g00196 Car13g00612 Car18g00190 Cpe09g00997 . Bhi08g01669 Tan05g1955 Cmetu12g1893 Lac10g0499 Hepe07g2193 . . Cla03g00292 Cam03g0310 Cec03g0305 Cco03g0318 Clacu03g0311 Cmu03g0921 Cre03g0612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004569 4 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00190 Car_Chr18 FPKM 1.79607 1.82822 7.57903 6.305491 6.534935 7.166628 6.641483 11.365919 10.230563 10.607465