Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00198 ATGGCGCCGCCAACACTTTTTCTCTCTCTAATCTCTCTCTTCCTCCTTTCCTCTCTCTCCACCACCCTCTCCGCCGCTCCGGCCGCCGTACAGAACCCCGAACTCGTCGTTGAAGAAGTACACAGGAGCATAATCAACGCGACAAAGCGGAGGAATTTGGGATATCTTTCATGTGGAACGGGAAATCCGATCGACGATTGCTGGCGGTGCGATTCAAATTGGGAGAAGAATCGCCAGAGATTAGCCGACTGTGGAATCGGATTCGGCAAAAACGCCATCGGCGGCCGTGACGGTAAAATCTACGTCGTCACCGATTCCGGCGACGACGATCCCGTTAACCCAAAACCGGGAACTCTCCGGTACGCCGTAATCCAAGACGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTAATCCGATTAAAAGAGGAACTAATCATGAACTCATTCAAAACCATCGACGGCCGTGGCGCCAGCGTCCACATCGCCGGCGGCCCCTGCATTACAATTCAATACGTAACGAACATCATAATCCATGGCTTGAACATTCACGATTGCAAGCAAGGAGGAAACACAGACGTGAGAGATTCCCCAAGACATTTTGGGTTCCGAACTATCTCCGACGGCGACGGCGTTTCAATCTTCGGCGGCAGCCATGTCTGGGTGGATCACTGCTCGTTGTCCAACTGTAATGATGGGTTGATCGATGCGATTCATGGGTCGACGGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGCTTGGACATAGTGATTCGTATACTCAAGATAAGAATATGCAGGTCACCATAGCTTTTAACCACTTCGGTGAAGGGCTTGTTCAACGAATGCCCAGATGCCGACATGGGTATTTTCACGTGGTGAACAATGACTACACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCGACCATTAACAGTCAAGGCAACAGATTTGTAGCTCCTAACGACAGATTCAGCAAAGAGGTGACAAAGTATGAGGATGCGCCCGAGAGTGAGTGGAAGCATTGGAATTGGAGGTCGGAAGGGGATATGATGGTGAACGGTGCGTTTTTCACGGCTTCCGGCGCCGGAGCGTCGTCGAGCTATGCTAGAGCGTCGAGCTTAGGGGCGAGGCCGTCGTCGCTGGTCGGGACAATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1233 51.74 MAPPTLFLSLISLFLLSSLSTTLSAAPAAVQNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKHWNWRSEGDMMVNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1127035 1129011 - Carg06765-RA Car18g00198 165900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00198 410 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Car18g00198 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Car18g00198 410 PANTHER PECTATE LYASE 18-RELATED 25 407 IPR045032 GO:0030570
Car18g00198 410 PANTHER PECTATE LYASE 22-RELATED 25 407 - -
Car18g00198 410 SUPERFAMILY Pectin lyase-like 37 405 IPR011050 -
Car18g00198 410 Pfam Pectate lyase 146 327 IPR002022 -
Car18g00198 410 Gene3D - 61 403 IPR012334 -
Car18g00198 410 SMART amb_all 136 333 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00617 Car18g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00044 Car-Chr5:230257 Car18g00198 Car-Chr18:1127035 0 dispersed
Car13g00610 Car-Chr13:7838479 Car18g00198 Car-Chr18:1127035 8.98E-145 dispersed
Car14g01674 Car-Chr14:13329725 Car18g00198 Car-Chr18:1127035 0 dispersed
Car17g00103 Car-Chr17:607458 Car18g00198 Car-Chr18:1127035 0 dispersed
Car18g00198 Car-Chr18:1127035 Car19g00112 Car-Chr19:937841 0 dispersed
Car12g00040 Car-Chr12:186828 Car18g00198 Car-Chr18:1127035 0 wgd
Car13g00617 Car-Chr13:7884129 Car18g00198 Car-Chr18:1127035 0 wgd
Car18g00198 Car-Chr18:1127035 Car04g02565 Car-Chr4:20223443 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00198 K01728 - csv:101209736 777.319