Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00201 ATGGCAGCTTCCGCCATGGCCGCCGAGCCGACTCCAGAGGTACTTTCTTGGCTAAAAACCCTACCTCTCGCTCCTGAATATCACCCTACTTTGGCTGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTTCTTCCTTCGCCGAAGAAAACTGTAATTCTCAATTTTAATAAGTCGCTTGCTGCTCGTGCGCCATGTTCTGACTCGATTAACACCAAGTCTCCGCCTACATTCACTACTCGCCAACAGCAGATCGGGTTTTGCCCGCGAAAAACACGCCCGGTTCAAAAACCAGTGTGGCAGAGCGGTGAGTACTACACATTTCAGCAATTTGAGGCTAAGGCGAAGGCCTTTGAGAAGAGTTATTTGAAGAAATGTACGAAGAAAGGAGGGCTTTCGCCTTTGGAGCTCGAGACGCTCTACTGGAGGGCTACTTTGGATAAGCCCTTTTCGGTGGAATATGCGAATGATATGCCTGGCTCTGCGTTTGTACCTGTGAGTACAAAGATGTTTAGGGAGGCAGGGGATGGCACAACGCTTGGTGAGACGGCGTGGAACATGAGAGCAGTGTCTAGGGCCAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCAGGCGTTACTTCGCCAATGGTGTATGTTGCTATGCTGTTTAGCTGGTTTGCTTGGCATGTAGAAGACCATGATTTGCATAGCTTAAATTATCTGCATATGGGGGCGGGGAAAACATGGTATGGCGTGCCGAGAGACGCTGCTGTGGCGTTTGAGGAGGTTGTTCGAGTTCAGGGATACGGAGGAGAAATCAATCCCCTTGTTACTTTTGCCATTCTTGGTGAGAAGACGACCGTGATGTCACCAGAAGTTCTTGTTAGCTCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGTGAATTTGTTGTCACTTTTCCTCGGGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGCGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAATGGTTGCTAAAGACGCTGCGATTCGTAGAGCTTCAATCAATTATCCTCCAATGGTATCTCACTTTCAGTTGCTATACGATCTTGCTCTAAGTTCCAGATCACCTCTGTGCACTGGTTCTGAACCGAGAAGTTCACGACTAAAAGATAAAAGAAAGAGTGAAGGCGAAACAGTTATAAAGGAGTTATTTGTACAGAATATTCTCGAGAATAACAGCCTGCTGGACGTTCTCGGAAGTGGAGTTTCAGTTGTACTTCTTCCTCAAGGTTCTTCAGATTCTATTTATTCAAGACTGCGTGTAGGATCCCACATGAGAGGCAAACTTAGATTTCCTGCTGGTTTTTGCAATTCTAAGGAAGAAGCCGAATCCCCTCAAAGTTTCGATTATGATAATCTCACACTAGAAAACAGCCAGGGAATGAATCGAGTTAAAGGTCTCTATTCAGTCAACGGGCTTTATTCTACTCTATCTGAGAGAAGCACAGGTAATTTATGTGCGTCAAGTTCAAGGATTTTGAATGCCACCAACGAACGAGGTGGTAGCGTTCACTGCGATGGATTATCGGACCAAAGACTGTTTTCTTGTGTCACGTGTGGCATTTTAAGCTTTGCCTGTGTAGCCATCGTTCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCGGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCCGGGATAACCGGTGAAGGGCTTGTTATTAGAGATGGACATGGTGTTGCTTCTAATAGTGGAAAAAGAGAAAGGTGCGTCGCTGATGGTTTGTACGATGTCCCAGTCCAGGCCGTCAATCGCCAGCTTCCAGTAGCGGATCAAAGTTACAAAGCTAATTTTAATGCCGAAAAACGAAACGAGACTTCTGCCCTTGGCATGCTCGCATTGGCTTATGGACATTCATCTGATTCCGAGGAGGATAATGCTGAAGCGGATGCTGCTTTACATGCCAATGATGCTAAACCGACAATTTGTTCCTCAGTAGACCAATATCAGTTTGAAAATTCTGGTCTTACTTCTAGTGAATATTGTAAAAACAGTGCAACTTCCAATCATGATCCCTTGTCAGCTAACTCTGCAGATCAAATGCAGTTTCAAGTCAATGACTATGAAGAATTTGGAAGAGCTAGATTTGATTCCAAAGACCCATTCAATTGTTCTTCGGAGTTTGAAATCGATGGCGTAGGTTCAACCAAGACAAATGACTTGTCAACTAGATATCAAGATTCACATGTGAATGGAAAACCTTCCTTAGATACCGATACTGAAAAACCAATGTTTGAGCAGTCCGCTGAACCAGTAGAGATCGAGAATATGCCTTTCGCTCCAGATATCGACGAAGACTCCTCTAGGTTGCATGTATTCTGTCTAGAACACGCAAAAGAAGTGGAACAACAACTTCGCCCTATTGGAGGCGTGCATATTCTTTTACTTTGTCATCCAGACTATCCAAAGATGGAAGCCGAAGCGAAATTGATGGCACAAGAATTAAGTATCGACCATCTGTGGACTGATACGACGTTCAGAGATGCTACCCAAGACGAAGAAAAGAGAATTCAGTTAGCTTTAGATAGCGAGGAAGCGATTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATTAATCTCTTTTATAGTGCCAACCTTAGCCATTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGGCGCAGTACTTCGGGTAACTCTTCGGGTAAGCCGAAAGTCTATCAAAGGAGGAGCGGCAAGCTGAAAAGAGTAGTTGTAGGGAAATGGTGTGGGAAAGTCTGGATGTCGAATCAAATTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTCGATGGTTTTCCTTCTTGGACAATGTCGGATGAGAAGATCGAATGGAAATCGGACAATATCCAGAAAAGTGAGACTGTTAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGTGGGGCGGCGACTAAGAAAGCCGAACCTATAGAATCGGAGGATATTGTTTCGGATAACTCGGGTGACGATTGTATTCATCAGCATCATAGGATTCTACAAAACAAGCGGTCTAAAATTGTTGCGAGTAAAGATGTAATGTCGGATGATTCTGTGGAGGATGTTTCTTATAAAAAACATGGAAGAGTTCCTGTCAATGAGGAAGCTTATTGTGAGACAGACGACCCTGGTTCAGACGAGGGTCCAGACGAATCGCTAGGAGATCGTCATACTAAGCTGCACAGAGGGTTCTACGGATTCAAGCTGCCCAAATGGGGCGAGATAGAACCTGCAGTTTCCGATGATTCCTTAGAGCGCGATTCTTCTCAGTTTCGTGGTAAAACGAGTAAAAGCAAGATAGATAAATATGTTGAGAGACAAGATGCACTTTCAGACGAGTGTTTGGAGAGTCCTCTTAAGCAATATAGAAGGATTCCGAAAAGCAAGCAAGCCAAAGTTGTTAAAAAGAACGCCATTTCGCATGATATACGGGACGATAGTTTTCTTTGGCATCGTCAAGGGACTTCTAGAAGCAAGATGGCCACGATCGAGAGTGAAGATGCAGTTTCGGAGGATTCCTTCGAAAATAGTTCTCATCAGCATATGAGTACACCTCGAAGCAAATCGGCCAAACGTACTGCAAGGGAAAATGTATTTTCAGATGATCCAGATGAAGATGATACCTCTCTTCTGCACCATAGGAAAAATGTAAGAAATGTGCAATCCAAGTACTTCGAGAGAGAAAATACACCAGACGACCAACTCGATGATAGTGCTAATCAGTGCAGGACGAGGGTACTTCGAAGTAAGCCTGTTAAGAAAGAGACCATTTCTCAAACGAAACAAGAGATTCTTCGACCTGCAAAGCGGGGAGCCTCTCGAACTTTGAAAGAAGAATTCTCTCCACCTCTAAAACGTGGAGGCCGCCATACCTTAAAACTAGAGACCCCTCAGCCAACAAAACAACTCGCCCCAAATCGACGTGGTAAGCAAGCTAAGAGGAATAGTAAATTGACCGATTTAGAATCAGAGGAAGAGCAACAACCGGGTGGGCCGAGCACACGTCTTAGACAAAGAACCCCAAAGCCTACTAAATTTTCAGAAACGAAACCGAATGATAAAAAGCCAATTGGTAAGAAAAAGGTGAAGAATGCTTCATCTTTGAAGACTCCAGCAGGCCATAGAGACTCAAAAGCAAGGGATGAGGAATCAGAGTATCTTTGCGATATCGAGGGCTGCAATATGAGTTTCGGTTCAAAACAAGAACTCGTCTTGCACAAACGAAACATTTGTCCTGTCAAAGGGTGTGGAAAGAAATTCTTCTCACACAAGTACCTCGTGCAACATCGTCGAGTACACATGGACGATCGTCCCCTCAAATGTCCATGGAGGGGCTGCAAGATGACATTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGACCGACCTTATGTTTGTGCTGAACAAGGATGCGGTCAGACATTCAGATTCGTGTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGGTAGAGGTTAG 4674 44.27 MAASAMAAEPTPEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVLPSPKKTVILNFNKSLAARAPCSDSINTKSPPTFTTRQQQIGFCPRKTRPVQKPVWQSGEYYTFQQFEAKAKAFEKSYLKKCTKKGGLSPLELETLYWRATLDKPFSVEYANDMPGSAFVPVSTKMFREAGDGTTLGETAWNMRAVSRAKGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAILGEKTTVMSPEVLVSSGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCAEAANIATPEWLMVAKDAAIRRASINYPPMVSHFQLLYDLALSSRSPLCTGSEPRSSRLKDKRKSEGETVIKELFVQNILENNSLLDVLGSGVSVVLLPQGSSDSIYSRLRVGSHMRGKLRFPAGFCNSKEEAESPQSFDYDNLTLENSQGMNRVKGLYSVNGLYSTLSERSTGNLCASSSRILNATNERGGSVHCDGLSDQRLFSCVTCGILSFACVAIVQPREQAARYLMSADCSFFNDWVVGSGITGEGLVIRDGHGVASNSGKRERCVADGLYDVPVQAVNRQLPVADQSYKANFNAEKRNETSALGMLALAYGHSSDSEEDNAEADAALHANDAKPTICSSVDQYQFENSGLTSSEYCKNSATSNHDPLSANSADQMQFQVNDYEEFGRARFDSKDPFNCSSEFEIDGVGSTKTNDLSTRYQDSHVNGKPSLDTDTEKPMFEQSAEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVHILLLCHPDYPKMEAEAKLMAQELSIDHLWTDTTFRDATQDEEKRIQLALDSEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSGNSSGKPKVYQRRSGKLKRVVVGKWCGKVWMSNQIHPLLAKRDPQEEDVDGFPSWTMSDEKIEWKSDNIQKSETVNRKSAGKRKMTYGSGAATKKAEPIESEDIVSDNSGDDCIHQHHRILQNKRSKIVASKDVMSDDSVEDVSYKKHGRVPVNEEAYCETDDPGSDEGPDESLGDRHTKLHRGFYGFKLPKWGEIEPAVSDDSLERDSSQFRGKTSKSKIDKYVERQDALSDECLESPLKQYRRIPKSKQAKVVKKNAISHDIRDDSFLWHRQGTSRSKMATIESEDAVSEDSFENSSHQHMSTPRSKSAKRTARENVFSDDPDEDDTSLLHHRKNVRNVQSKYFERENTPDDQLDDSANQCRTRVLRSKPVKKETISQTKQEILRPAKRGASRTLKEEFSPPLKRGGRHTLKLETPQPTKQLAPNRRGKQAKRNSKLTDLESEEEQQPGGPSTRLRQRTPKPTKFSETKPNDKKPIGKKKVKNASSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWRGCKMTFKWAWARTEHIRVHTGDRPYVCAEQGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1148147 1155128 + Carg06768-RA Car18g00201 165903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00201 1557 MobiDBLite consensus disorder prediction 1010 1029 - -
Car18g00201 1557 MobiDBLite consensus disorder prediction 1396 1415 - -
Car18g00201 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1464 1493 IPR013087 -
Car18g00201 1557 MobiDBLite consensus disorder prediction 761 775 - -
Car18g00201 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1496 1518 IPR013087 -
Car18g00201 1557 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Car18g00201 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1494 1523 IPR013087 -
Car18g00201 1557 MobiDBLite consensus disorder prediction 1322 1347 - -
Car18g00201 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1526 1550 IPR013087 -
Car18g00201 1557 MobiDBLite consensus disorder prediction 1381 1395 - -
Car18g00201 1557 ProSiteProfiles JmjC domain profile. 195 364 IPR003347 -
Car18g00201 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1466 1488 IPR013087 -
Car18g00201 1557 Pfam JmjC domain, hydroxylase 228 346 IPR003347 -
Car18g00201 1557 MobiDBLite consensus disorder prediction 1244 1289 - -
Car18g00201 1557 MobiDBLite consensus disorder prediction 761 784 - -
Car18g00201 1557 Pfam jmjN domain 25 58 IPR003349 -
Car18g00201 1557 MobiDBLite consensus disorder prediction 1214 1436 - -
Car18g00201 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1524 1555 IPR013087 -
Car18g00201 1557 MobiDBLite consensus disorder prediction 1090 1112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00201 - - - mcha:111008693 2565.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00624 Car18g00201 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02480 Car-Chr4:19717088 Car18g00201 Car-Chr18:1148147 6.25E-44 dispersed
Car16g01115 Car-Chr16:9594155 Car18g00201 Car-Chr18:1148147 4.36E-77 dispersed
Car18g00201 Car-Chr18:1148147 Car19g00173 Car-Chr19:1572092 5.18E-74 dispersed
Car18g00602 Car-Chr18:7096565 Car18g00201 Car-Chr18:1148147 1.36E-11 dispersed
Car18g00787 Car-Chr18:8855695 Car18g00201 Car-Chr18:1148147 3.20E-07 dispersed
Car04g02479 Car-Chr4:19712116 Car18g00201 Car-Chr18:1148147 1.89E-10 transposed
Car13g00624 Car-Chr13:7926930 Car18g00201 Car-Chr18:1148147 0 transposed
Car13g00623 Car-Chr13:7924587 Car18g00201 Car-Chr18:1148147 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5135 PF02373 JmjC 1.40E-36 CL0029 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00201 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0