Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00203 ATGGCACCGCAGGACAAGGGTCGTCCACTGCCGAAGTTCGGGGAATGGGATGTAAATAATCCTGCATCTGCTGAGGGATTTACGGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACTACTGGAAGTGTTGCCAATATGGTTTCTTCACAAAGTAATGAGCCTGCCTACAACAATGAAAGTTTCCCTCAGTCTCCTCCACCAAAGAAGAGGTGGTTTTGCTGTGGTTGA 231 46.32 MAPQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFPQSPPPKKRWFCCG 76
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1162739 1165215 - Carg06770-RA Car18g00203 165905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00203 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
Car18g00203 76 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 3 75 - -
Car18g00203 76 MobiDBLite consensus disorder prediction 49 65 - -
Car18g00203 76 MobiDBLite consensus disorder prediction 49 76 - -
Car18g00203 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 75 IPR040387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00203 - - - csv:101211128 141.739
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00922 Car-Chr16:7560260 Car18g00203 Car-Chr18:1162739 5.01E-22 dispersed
Car18g00203 Car-Chr18:1162739 Car20g00588 Car-Chr20:3301720 2.17E-16 dispersed
Car11g01339 Car-Chr11:10993936 Car18g00203 Car-Chr18:1162739 7.92E-20 wgd
Car14g00627 Car-Chr14:3507137 Car18g00203 Car-Chr18:1162739 7.13E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g894 . . . . . . Bma06g00243 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0050 . . . . . . . . . . . Bpe15g00666 . . Sed08g2464 . . . . . Car18g00203 . . Bhi08g01696 Tan05g2899 Cmetu12g2048 Lac10g0538 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00203 Car_Chr18 FPKM 8.004807 9.295576 307.416809 293.996155 5.886426 6.731633 6.627121 54.336308 54.697578 54.303265