Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00209 ATGGAAGGACAGGAGGGAACTCAGCAGCCTCATCTCGTGCTTTCTCACAAGCTCTTCCTTCTAACTCACCCGGATGTTCAAGATATCGAGAAGGTCAATCTTAGGGAGGAAGTATTGGCCTCCGTTAAAGCTGATGACATGGCTCCTTTATACGAAGCCCTAACCGGAAATTCGCTATTGGATTTGGATCGGAGCGTGTTAGACTCGATGCGTGCGAAAAACGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCTGAAGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCCAAATCACTTTTCTTCATTCGTATCGGTGATAAGGACAGAGCACTGGAGCAACTCAAGGTAACTGAGAGCAAAACAGTTGCGGTCGGACTTAAGATGGATTTGGTTTTCCATACTCTAGCACTTCAGTTTCTGGAGTCCTATAAGAGTGTCACAATCAAAGCCATGGCGAATGCATTTGGAGTATCTGTGGAATTTATCGATCTGGAGTTGTCTCGTTTCATTGCTGCGGGAAAACTTCATTGTAAGATCGATAAAGTAGCAGGTGTTCTCGAAACTAATCGTCCTGATTCGAAGAACGCTCTGTACCAAGCTACCATCAAGCAAGGAGACTTCTTACTCAACCGTATCCAGAAGTTGTCTCGTGTCATTGATCTGTAA 687 44.83 MEGQEGTQQPHLVLSHKLFLLTHPDVQDIEKVNLREEVLASVKADDMAPLYEALTGNSLLDLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESKTVAVGLKMDLVFHTLALQFLESYKSVTIKAMANAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1186155 1187927 + Carg06776-RA Car18g00209 165911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00209 228 Coils Coil 67 98 - -
Car18g00209 228 Pfam 26S proteasome subunit RPN7 63 153 IPR045135 -
Car18g00209 228 Pfam PCI domain 137 196 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00209 K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7 - csv:101212349 250.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00630 Car18g00209 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00630 Car-Chr13:7956804 Car18g00209 Car-Chr18:1186155 1.21E-52 transposed
Car13g00629 Car-Chr13:7954950 Car18g00209 Car-Chr18:1186155 3.06E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g912 . . . . Bpe12g00682 . . . Cmo13g00813 Cmo18g00192 . . . . . Cpe20g00329 . . . . . . . . . . . . . . . Cone2ag0954 Cone16ag0042 . . . Csa01g00932 Chy12g01195 Cme12g01618 Blo13g00159 . . . . . . Bma08g00127 Sed02g1603 . . Cma13g00781 Cma18g00216 Car13g00630 Car18g00209 Cpe09g00982 . Bhi08g01708 Tan05g2917 Cmetu12g0851 Lac10g0546 Hepe07g2154 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00209 Car_Chr18 FPKM 80.802155 78.42247 39.56237 37.358829 10.570954 7.860703 8.544432 35.030231 39.567108 42.518303