Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00219 ATGGCGGGCAATTCGGCAGTGGCCTTGGAAGATGTGCCCTCCGTGGATCTCATGACGGAGCTTCTCCGTCGTATGAAATGCTCCTCGAAGCCTGACAAGCGCCTCATTCTCATCGGTCCACCCGGATCAGGTAAAGGGACCCAATCACCAATCATCAAGGATGACTACTGCTTGTGTCATTTGGCTACTGGTGATATGTTAAGAGCAGCTGTGGCGGCTAAAACTCCTCTTGGTATCAAGGCTAAAGAGGCTATGGATAAGGGTGAACTCGTGTCTGATGACTTGGTTGTTGGCATCATCGATGAAGCGATGAAGAAACCTTCTTGTCAGAAAGGCTTCATTCTTGATGGATTTCCAAGAACCGTAGTTCAAGCACAAAAGCTTGATGAGGTGCTTGACAAGCAAGGAGTGAAAGTTGATAAGGTGCTCAACTTTGCTATTGATGATGCTATTTTGGAGGAGAGGATCACTGGGCGATGGATACACCCATCCAGTGGCAGAAGTTACCACACCAAATTTGCTCCTCCAAAGACTCCTGGTGTTGACGATGTAACTGGAGAGCCTTTGATTCAACGGAAAGATGATACTGCCGCTGTATTGAAGTCACGTCTGGAGGCATTTCACAAACAAACCATGCCGGTGATTGATTATTATGCGAAAAAGGGTCTTGTCGCAAATCTGCACGCTGAGAAGCCTCCAAAAGAAGTCACAGCTGAGGTTCAGAAAGTGCTCTCATAG 738 47.43 MAGNSAVALEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDDYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEVLDKQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTMPVIDYYAKKGLVANLHAEKPPKEVTAEVQKVLS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1240704 1244581 + Carg06786-RA Car18g00219 165921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00219 245 ProSitePatterns Adenylate kinase signature. 113 124 IPR033690 -
Car18g00219 245 PANTHER NUCLEOTIDE KINASE 11 245 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 Hamap Adenylate kinase [adk]. 33 245 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 Pfam Adenylate kinase, active site lid 159 194 IPR007862 GO:0004017
Car18g00219 245 Pfam Adenylate kinase 37 222 - -
Car18g00219 245 TIGRFAM adk: adenylate kinase 34 244 IPR006259 GO:0004017|GO:0005524|GO:0016776
Car18g00219 245 CDD ADK 34 236 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 Gene3D - 5 245 IPR027417 -
Car18g00219 245 PANTHER ADENYLATE KINASE 3 11 245 - -
Car18g00219 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 244 IPR027417 -
Car18g00219 245 PRINTS Adenylate kinase signature 36 49 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 PRINTS Adenylate kinase signature 64 78 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 PRINTS Adenylate kinase signature 113 129 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 PRINTS Adenylate kinase signature 192 207 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car18g00219 245 PRINTS Adenylate kinase signature 209 223 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00219 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - csv:101214286 466.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00061 Car18g00219 CCT
Car10g00061 Car18g00219 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00512 Car-Chr15:2780835 Car18g00219 Car-Chr18:1240704 5.04E-37 dispersed
Car10g00061 Car-Chr10:277588 Car18g00219 Car-Chr18:1240704 5.78E-160 wgd
Car11g01321 Car-Chr11:10892161 Car18g00219 Car-Chr18:1240704 3.68E-08 wgd
Car14g00645 Car-Chr14:3594148 Car18g00219 Car-Chr18:1240704 1.59E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00219 Car_Chr18 FPKM 3.758144 4.016297 0.761978 0.559784 9.972483 9.148266 12.264151 0.774591 0.622059 0.376181