Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00237 | ATGGAATCTATGTCAGTGAATGAAGTGGAAAGAACAAACCAATTCACTTCTGCTACACTTGTTTGGGAACACCTTCTTTCCCTTCATTCAGCTCCCTCTTTCCCTTTCATTTTTACTCTCTTCTTCCCCCTAATCTCCACCTTTTTGGGAACTTCCAAGTTCCAATCTTCTTGGAACACAGTTTTTGCAGAGACAGAGGTTGAGAAAATGGCATCATCAACCTCAGGATCATCGAAGAGAGCTCGAGGAGCTAACAATGCCGGGAGTCAACCAGTTTCTTGCCTTGTTGATGGCTGCAATTCAGATCTAAGCAACTGTCGGGATTACCACCGCCGTCATAAGGTTTGTGAGCTGCATTCTAAGACTCCTCAGGTTACCATTGGTGGCCTGAAACAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCATTCACTTGAGGAATTTGATGAGGGGAAAAGGAGCTGTCGGAAACGACTGGATGGCCACAACCGCCGCCGGAGGAAGCCTCAGACTGACCTCTTGCCTCGATCTGCTGGGCCTTTCTCCCACGGCTGGTCCTCCACCGGAGAGACTGCCGCCCTTCACAGGGACCAACAACTAAATTTCCTCGAAAAACAGAGCCTGTTTGTGGAACAATCCGACCACAGCAACAACTACAAAACGGCGCAAACACTGGCCTTCATGCACGGCGGCCCGACAACAACATGTCAACCCCTCCTCCGGTCCATGAATACCCTGTCAGAAAACGGCGGCGGAGGCGGCGGCGGCGGGGAAAGAAACAAGATGATTTATGACAGGTTCAGAATTGGGGTTAGTGAATCAGATTGTGCTCTCTCTCTTCTGTCATCACCACAGGCTCAGACTGATCATCAGCCACAGCAGCAGCCGCAGCCGCAGCAGGCGGAGAGTGGTTCTTCTGGGCATTTGGATTTGGGCAGAATCGAACAGCATCAGCGGAGCGCCGCCGTTTCTCTGCTGCAGCCATTGAACCACCACCACCACCACCACCACCATAGCCATAACAGTTATGAGAATTCTGATTCCGACAATCATGGAGGGGCCCTTAATTTCCCCGGGATCTTTGGAATTGCCTCCGAGAATGCTGGAAATGAATCCCCTTCCACCCTCCCATTTCATTGGGAGTAG | 1143 | 51.01 | MESMSVNEVERTNQFTSATLVWEHLLSLHSAPSFPFIFTLFFPLISTFLGTSKFQSSWNTVFAETEVEKMASSTSGSSKRARGANNAGSQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAGPFSHGWSSTGETAALHRDQQLNFLEKQSLFVEQSDHSNNYKTAQTLAFMHGGPTTTCQPLLRSMNTLSENGGGGGGGGERNKMIYDRFRIGVSESDCALSLLSSPQAQTDHQPQQQPQPQQAESGSSGHLDLGRIEQHQRSAAVSLLQPLNHHHHHHHHSHNSYENSDSDNHGGALNFPGIFGIASENAGNESPSTLPFHWE | 380 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 1353627 | 1355883 | - | Carg06804-RA | Car18g00237 | 165939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00237 | 380 | MobiDBLite | consensus disorder prediction | 283 | 305 | - | - | |
| Car18g00237 | 380 | MobiDBLite | consensus disorder prediction | 330 | 350 | - | - | |
| Car18g00237 | 380 | Pfam | SBP domain | 94 | 167 | IPR004333 | GO:0003677 | |
| Car18g00237 | 380 | ProSiteProfiles | Zinc finger SBP-type profile. | 91 | 168 | IPR004333 | GO:0003677 | |
| Car18g00237 | 380 | MobiDBLite | consensus disorder prediction | 158 | 181 | - | - | |
| Car18g00237 | 380 | MobiDBLite | consensus disorder prediction | 283 | 307 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car14g00872 | Car-Chr14:5138923 | Car18g00237 | Car-Chr18:1353627 | 3.81E-32 | dispersed | |
| Car17g01323 | Car-Chr17:9901582 | Car18g00237 | Car-Chr18:1353627 | 5.93E-48 | dispersed | |
| Car10g00040 | Car-Chr10:176209 | Car18g00237 | Car-Chr18:1353627 | 6.68E-69 | wgd | |
| Car11g00025 | Car-Chr11:111811 | Car18g00237 | Car-Chr18:1353627 | 1.32E-74 | wgd | |
| Car11g01303 | Car-Chr11:10804091 | Car18g00237 | Car-Chr18:1353627 | 5.75E-43 | wgd | |
| Car13g00660 | Car-Chr13:8113900 | Car18g00237 | Car-Chr18:1353627 | 5.76E-144 | wgd | |
| Car14g00662 | Car-Chr14:3658014 | Car18g00237 | Car-Chr18:1353627 | 8.16E-42 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5139 | PF03110 | SBP | 6.20E-31 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00237 | - | - | cpep:111802519 | 662.914 |