Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00247 ATGGCAGCCTTTTCATATCAATACCAACCTTTTCTTCTTGACTCAATCCTTCAAGCCAACAATCCCCTCAAAATGGGTGGCTTTTTGGATGAACCAAATTTCAATATCAATTGCTTCACTCAATTCTTCGCTCAAGAACAAGAACAAGAACAACCCATTCACCGTTTTCCCGACCTTTGTAAACAGAGCCCTGAATCTTTCAGTTTGGTCGAGAAATCCGATAGCGGTGAGCCACCGGTCGTAAGTCAGTCGAAGCCGACTGTGACTTCCCCTTGTAGTAAGAAAAGGAAGAGCCGTGGAAATAACTCATCGGCTATCTCCGCTCAATCTAAGGAAAGCATTGGGAAGAAGGTGAAAACTAAAAGGGAATTGGATGAAAGGAAAGAAGGAGATGAAAAGGGCAAAACGGGGAAAAAAGAGGAGAAAAAGGGTTCAGAAGATGGTGCTCCGACGGGTTATATTCACGTCAGAGCTAAGAGGGGCCAAGCCACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTACAACGACTTGTTCCCGGTTGTGACAAGGTAACAGGGAAGGCGCTCATGTTGGATGAGATTATCAACTATGTTCAGTCTCTACAAAATCAAGTTGAGTTTCTCTCTATGAAGCTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTAGACGGCCTCATGATCCAACCCGAGTCATCGTCCTTGAGTAGCATAACGCCACAACTACCCGCAATGGCACAATGCAGCGTCATATCACCGCCAACATTGATCGACACCACCACAACAACAACACCAACCCCAACAATCGCCACCCCAAATTCCTATCCATTAACAGACAATTCAGCTAATTTGTTTCTACTACAACAAGTGATGAATCCAAACGCGTACACTCAATCTCAGGACAACGTTAAGGTTTCATCATTGGACGTCGAAGAACATAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGAGCTACTTCCATTAA 1038 44.22 MAAFSYQYQPFLLDSILQANNPLKMGGFLDEPNFNINCFTQFFAQEQEQEQPIHRFPDLCKQSPESFSLVEKSDSGEPPVVSQSKPTVTSPCSKKRKSRGNNSSAISAQSKESIGKKVKTKRELDERKEGDEKGKTGKKEEKKGSEDGAPTGYIHVRAKRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPESSSLSSITPQLPAMAQCSVISPPTLIDTTTTTTPTPTIATPNSYPLTDNSANLFLLQQVMNPNAYTQSQDNVKVSSLDVEEHKRKLLISSGIGDNLSYFH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1434555 1437115 - Carg06814-RA Car18g00247 165949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00247 345 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Car18g00247 345 MobiDBLite consensus disorder prediction 66 153 - -
Car18g00247 345 MobiDBLite consensus disorder prediction 77 113 - -
Car18g00247 345 MobiDBLite consensus disorder prediction 114 148 - -
Car18g00247 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00020 Car18g00247 CCT
Car13g00670 Car18g00247 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00247 Car-Chr18:1434555 Car08g00218 Car-Chr8:1369372 4.60E-45 dispersed
Car13g00671 Car-Chr13:8172861 Car18g00247 Car-Chr18:1434555 2.05E-67 transposed
Car10g00020 Car-Chr10:102908 Car18g00247 Car-Chr18:1434555 1.66E-44 wgd
Car13g00670 Car-Chr13:8171756 Car18g00247 Car-Chr18:1434555 3.57E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5140 PF00010 HLH 6.60E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00247 - K18878 csv:101205943 447.588