Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00248 TTGTCAACCCGGATTCTTTCCCTCCTCATCTTGTATTCTGTTATTTTCTCGAGAAAATCTAGCGCCGAGAAAATTCCTGCTAATCTTGGAACTGCGGCGCAATCACTTGGCATATTTCCGGTGACGGAAATGGATCGGAGGAGAGTTGCTAGTCCAGTCTCCGCCCGGCAGTGGAGTGGTGGCTCGAGCAGCACGGGATCATCTTCTCCGGCTCATCCTCACGCTCTATTGGGTTCGAATTCCACCATCAAGCGCGCTCAGAATGTTGCCGCCAAGAAGGCTGCTCAACGTTTGGCTGAGGCTATGGCCAACACGCGGCCGCCCGTGGAGGGCGACGATGAAGATGAAGATGAAGAGGATGATCTCAACTTCCGATTCCGTGCTCCGCCTCCTCCTAGTCACTCATCTTATCCCAGTGCTGTGAACAGTAACAATTCCAATTCGTTTCATACGATTTCAGGTCCCAGGATTAACAGATCTCCGTCTCCCGCGTTAGGTCGTAATTTCGTAGAGCATGTTCCTCAAGTTCGATCCACATCAGCTGGTAGATCATCGAGGTCCGTGCGTTCGAGCCAGATCGTTCCACCAAGTAAACCTCCACCCAGAACTCCAGTCTTCATTCCTCCAATTGAACCTCCTTCTAATAGGATTGGAGATAGAAGATTTACATCAGATATCGGACAGGTCAACTCCAAAGATGCAGGGGATCAGTCCGAAGCTTCTGCACTACGTGATGAGCTTGATATGCTACAAGAAGAGAACGAGAATATACTTGGAAAGCTTCGAGAAGCAGAAGAAAAACGGGAAGAGGCAGAGGCTAGAGCTAGAATGCTAGAGAAACAGGTTGCTACTCTTGGAGAGGGTGTATCTTTGGAAGCCAAATTATTAAGCAGGAAAGAAGCAAAACTGCGTCAAAGAGAGGCTGCACTCAAGGCTGCAATACCAACCAAGGATAGTAGAAACGAAGAAATTGCTGCCCTTCGTTCAGAAATTGAGAACTTAAAAGATGAGTCATCAGCAGCTACAGAACAACTCCGAGAAGCAGAGTCTGAAGCAAAGGCTCTTCGTGTAATGACACAAAGAATGATTTTGACACAAGAGGAGATGGAAGAGGTTGTTTTGAAGAGGTGTTGGCTTGCTCGCTACTGGGGCATAGCTGTTCAATATGGAATATGTGCGGATATTGCACTCTCAAAACATGAGTATTGGTCTTCTTTAGCTCCTTTGCCATTCGAAGTTGTTACTTCTGCTGGACAAAAGGCTAAGGAGGAGCCTGAAGGTCGAAATGATCAAGATAGGAGTAAGCTCATCCAGGATTTAAATGATCTATCTGGTGAAGGAAATATTGAGAGTATGCTTTCAGTTGAAATGGGACTGAGAGAACTAGCATCTCTAAAGGTTGAAGATGCAGTTGTGCTTGCATTGGCACAACATAGATGTCCAAGTTTGATTCATCAATCAGATTCAAAATCACATGCTGATCGGAAGTTTACTGAGGCTTTTGAACTAAGTGAAGCTGAAGCTGAAGATATTCATTTTAAGGAGGCTTGGCTCACATACTTCTGGAGAAGAGCCAAGACATATGGTGTGGATGAGGATGTTGCAGATGAGCGGCTTCAGTTTTGGATCAGTCGTAGTGGACAGCCTCCTACTTCACATGATGCTGTCGATGTCGAACGAGGTCTTGTAGAGCTCAGAAAGCTTGGAATAGAACAACTGCTTTGGGAGGCATCTAGAAAGGAAATCGACCAATCCTCTGCCAGGGAATTAGACACCTAA 1779 46.21 LSTRILSLLILYSVIFSRKSSAEKIPANLGTAAQSLGIFPVTEMDRRRVASPVSARQWSGGSSSTGSSSPAHPHALLGSNSTIKRAQNVAAKKAAQRLAEAMANTRPPVEGDDEDEDEEDDLNFRFRAPPPPSHSSYPSAVNSNNSNSFHTISGPRINRSPSPALGRNFVEHVPQVRSTSAGRSSRSVRSSQIVPPSKPPPRTPVFIPPIEPPSNRIGDRRFTSDIGQVNSKDAGDQSEASALRDELDMLQEENENILGKLREAEEKREEAEARARMLEKQVATLGEGVSLEAKLLSRKEAKLRQREAALKAAIPTKDSRNEEIAALRSEIENLKDESSAATEQLREAESEAKALRVMTQRMILTQEEMEEVVLKRCWLARYWGIAVQYGICADIALSKHEYWSSLAPLPFEVVTSAGQKAKEEPEGRNDQDRSKLIQDLNDLSGEGNIESMLSVEMGLRELASLKVEDAVVLALAQHRCPSLIHQSDSKSHADRKFTEAFELSEAEAEDIHFKEAWLTYFWRRAKTYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQLLWEASRKEIDQSSARELDT 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1444088 1451183 + Carg06815-RA Car18g00248 165950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00248 592 MobiDBLite consensus disorder prediction 173 193 - -
Car18g00248 592 Coils Coil 317 358 - -
Car18g00248 592 MobiDBLite consensus disorder prediction 55 87 - -
Car18g00248 592 Coils Coil 240 288 - -
Car18g00248 592 MobiDBLite consensus disorder prediction 137 158 - -
Car18g00248 592 MobiDBLite consensus disorder prediction 194 211 - -
Car18g00248 592 MobiDBLite consensus disorder prediction 50 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00248 - - - csv:101221393 844.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00672 Car18g00248 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01068 Car-Chr12:10456811 Car18g00248 Car-Chr18:1444088 2.99E-112 dispersed
Car17g01292 Car-Chr17:9754181 Car18g00248 Car-Chr18:1444088 8.58E-26 dispersed
Car13g00672 Car-Chr13:8178509 Car18g00248 Car-Chr18:1444088 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g34 . Blo16g00288 . . . Bpe13g00185 Bma06g00282 . Cmo13g00860 . . . . . . Cpe20g00289 . . . . . . . . . . . . . . . . . Cone13ag0253 Cone19ag0238 Lsi02g00526 Csa01g00989 Chy12g01145 Cme12g01564 . . . . . Bpe15g00237 Bma03g01224 . Sed08g2408 . . Cma13g00829 Cma18g00295 Car13g00672 Car18g00248 Cpe09g00943 . Bhi08g01536 Tan05g3009 Cmetu12g2124 . Hepe07g2083 . . Cla03g00378 Cam03g0398 Cec03g0384 Cco03g0399 Clacu03g0397 Cmu03g1002 Cre03g0694 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001793 1 3 3 3 2 1 4 2 2 2 0 1 3 2 2 1 2 3 4 2 2 4 2 2 2 2 2 4 3 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00248 Car_Chr18 FPKM 27.478333 29.410826 31.869694 32.931499 34.503769 35.684292 34.42033 33.949345 33.319244 34.129578