Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00249 ATGCTTTCCAGAGTTGGGAGCGTCGGTTGGATGGAGAATCGAGAGGATGAAGGCTCTGCTTCCTGGACTAATAACGACACCCACAACCATCTCAATCACCCTGCTGCTAATTGCTCTGTTTTGGATAACAAGGACCAAATCAGCTCTCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGCATTGCTGCTAATGCCCTCCATAACCATAACGACATCAACGGCATAAGCTTCTCTCAGAATTTCACTGACCCACCTGATAATTTGTTGCTTCCCCATGGAGATTCATCCTCTTCTTGTTCCCCTTCTTCCTCTGTGTTCAATAACATTGACCCATCTCAATTGCAGTTCTTCTTACCCCCAACTCGCACTTTATCTTCCCTTTACAAGGTCATTGGTAATAACCCTTTAGAGCATGGCTTCGATTTCGGGGCAGAGGTTGGGTTTCTTGATGTCCAAGCTTCGAATACTTCGGCTCTGCTCAGCAGTGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACAAGTCAGATGAACAGTCCTAATATGTGCTTAGGCTCTCAATTGACAACACCTAACCTGCCCCAAATGACTGGAAATTGTTCGGGTTTAGCGGGATTCCAGAGTTTGGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCCTTTCCCTCAGTGGGAACTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGCTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTGTTCTAACAGGATTGAAGGGGGTGTTGGGAAAAATGAAGTGGGTGATGAAAATGCGAAGAGGAAAATGATTTATGCAGATGAGATGCAAGAAACTAGCATCGACACAACCCGTTTCAACTACGATTCTGATGACTTTACTGAGAATAATGACACTAAGTTGGATGAGAGTGGTAGAAATGTTGGAAGTACTTCTAACGCCAATAGTACAGTGACCGGCGGCGATCAGAAGGGAAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCCAAAATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTACCTGAAGGAACTACTGCAAAGAATCAATGACCTTCATAATGAATTGGAATTTTCTCCTTCCGGTACAGCATTGACGCCGAGCACAAGCTTTCACCCCCTGACTCCAACCCCACCGACCCTCTCGAGTCGTATAAAGGAAGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGTCGGGCAGTAAACATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCTCAGTTAGGGCATTAGATAATCTTGGCTTAGACATCCAGCAAGCTGTGATTAGCTGCTTCAATGGTTTTGCCATGGACATTTTCCGAGCAGAGCAATGCAGCGAAGGCCAAGATGTCCATCCTGAGCAGATAAAAGCAATACTATTGGATTCAGTAGGTTTCAATGGTGCGACATAG 1641 46.31 MLSRVGSVGWMENREDEGSASWTNNDTHNHLNHPAANCSVLDNKDQISSLSTFKSMLEVEDDWCIAANALHNHNDINGISFSQNFTDPPDNLLLPHGDSSSSCSPSSSVFNNIDPSQLQFFLPPTRTLSSLYKVIGNNPLEHGFDFGAEVGFLDVQASNTSALLSSGGGLLTGFTDLSPTSQMNSPNMCLGSQLTTPNLPQMTGNCSGLAGFQSLDENLGNALLLNRSKLLRPLESFPSVGTQPTLFQKRAALRKSLADKGSNLGVLSPDGGWCSNRIEGGVGKNEVGDENAKRKMIYADEMQETSIDTTRFNYDSDDFTENNDTKLDESGRNVGSTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGTALTPSTSFHPLTPTPPTLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSSVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGAT 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1454043 1459137 + Carg06816-RA Car18g00249 165951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00249 546 MobiDBLite consensus disorder prediction 314 328 - -
Car18g00249 546 Pfam Helix-loop-helix DNA-binding domain 362 404 IPR011598 GO:0046983
Car18g00249 546 CDD bHLH_AtAMS_like 358 421 - -
Car18g00249 546 PANTHER BHLH TRANSCRIPTIONAL FACTOR 97 544 - -
Car18g00249 546 Gene3D - 349 418 IPR036638 GO:0046983
Car18g00249 546 CDD ACT_UUR-ACR-like 475 535 - -
Car18g00249 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Car18g00249 546 MobiDBLite consensus disorder prediction 421 442 - -
Car18g00249 546 Coils Coil 394 414 - -
Car18g00249 546 MobiDBLite consensus disorder prediction 1 28 - -
Car18g00249 546 MobiDBLite consensus disorder prediction 312 359 - -
Car18g00249 546 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 544 - -
Car18g00249 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 422 IPR036638 GO:0046983
Car18g00249 546 MobiDBLite consensus disorder prediction 329 348 - -
Car18g00249 546 SMART finulus 361 410 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00673 Car18g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00695 Car-Chr14:3824074 Car18g00249 Car-Chr18:1454043 1.39E-151 dispersed
Car13g00673 Car-Chr13:8187877 Car18g00249 Car-Chr18:1454043 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5141 PF00010 HLH 2.10E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00249 - - cpep:111802474 1006.9