Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00298 | ATGCATAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACACCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTAATCGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAATGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGCGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGCGGCGCGACGTTGAATATCAATAATGAACGGTGGATGGAGTTTAATAATGACCGGTCTAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCCGATGGGATGATTTTGCCTTCTTCCAGGGATGTGAGATGCCCGGTTTATTTTACCTGA | 678 | 51.33 | MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT | 225 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 1798427 | 1799104 | + | Carg26535-RA | Car18g00298 | 166000 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00298 | 225 | PANTHER | OS05G0367900 PROTEIN | 22 | 225 | IPR044839 | GO:0098542 | |
| Car18g00298 | 225 | PANTHER | LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY | 22 | 225 | - | - | |
| Car18g00298 | 225 | Pfam | Late embryogenesis abundant protein | 98 | 201 | IPR004864 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car13g00617 | Car18g00298 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car14g00319 | Car-Chr14:1534654 | Car18g00298 | Car-Chr18:1798427 | 9.38E-06 | dispersed | |
| Car18g00298 | Car-Chr18:1798427 | Car06g00771 | Car-Chr6:5920630 | 9.55E-22 | dispersed | |
| Car13g00575 | Car-Chr13:7630924 | Car18g00298 | Car-Chr18:1798427 | 7.42E-132 | wgd | |
| Car18g00298 | Car-Chr18:1798427 | Car09g00844 | Car-Chr9:5154415 | 2.53E-10 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00298 | - | - | csv:101220480 | 384.03 |