Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00312 ATGACTCCCACCAGCAATCTCTTATCTTCCCTCTTTTTCTTCACACTCATACCTCTGTTTTCCAGAAACTCCATAGCAGACGATATCTTAAAACAAGGCCAATCCATTAACGATACCCAATCAATTGTCTCCGCCGCCGAGATATTTGAATTGGGATTCTTCAGTCAACCCCAAGCCACCAATTTGAAGTATTTAGCAATATGGTACAAGGGCGTCGTTCCCAAAACTGTCGTTTGGGTGGCAAACAGAGATACCCCTGTTTTAAGCTCCTCTGCCACTTTAAACTTCAGAAGAGATGGAAATTTGGTTCTTTTGAATCAAACAGGCGCAGCTTTTTGGTGGTCAAATTCGACAAAATCAATTCAAAATCCAATAGCTCAGCTGCTTGACACTGGAAATCTGGTTTTGAGAGATTCAAAATCAGAAGATTATGTGTGGCAGAGTTTTGATTATCCGACTGATACTCTGTTACCGGGTATGAAAATCGGGTGGGACTCCAAAACGGGTCTGAATCGAAAGCTAAAATCATGGACAAGTTCAAACGATGTATCATCGGGGGAATTCAGTTTTAGCCTCAACACAAATGGGCTTCCTCAATTCTTTGTTCATAAAGGAAACAAGACGATGTTTAGAGGTTGGCCTTGGTTCGATCATGATTTTGGGCAGAGTTACGGTAATGGGTTCAATTACGATCTTGTCTTTGATGTTTCAACAGAGATATCCTTTTCATATAACGATTCAGCGCATAGCCGTACAAGAATTGTGATGGATTCAAGTGGGTCAATTCTTCGGCATGAATGGAACGATGAGGGAGAAAAATGGCGCAAAGCATACTCATTTGATGGAGCTGGCTGCAATGACTACGATTTGTGTGGGAATTTTGGTCTCTGTAATCCCGCAGTGACAACAAGTTGTGGTTGTTTATATGGGTTTGAACAAATATCAACAAAAAACTTGTCAAATGGGTGTGTTAGAAGGGATCCAAAGATCTGCGAAGCTGGAGATGGGTTTATAAAGATAAGCAAGGTGAAATGGCCTGATTCTACAGGGGATTCTGTGAAAATGAAACTGGGTGTTAAAGATTGTGAGGCAGAGTGCTTGAAGGATTGCGGTTGTTTAGCGTATGGAACAGTGCAAATTCCTAAAATTGGGCTTGCCTGTGTCAATTGGTTTCACAAATTGGTTGATATTCGTTATGTTCCTGATGTTGGGTCGGGAGATGATATCTATGTGAGAGTTGCTGCTTCAGAATTAGAATCGGCTGATGAAAAGCGTAGTGTTGCAGTGGTTGTTGCTGTGCCGATTGTATCAGTGATGGTCTTTTTGGGTTTGATTGGCGGCTGGTTTTTCATTAGGAGAAGAGCTAGAGGTAAAGCCTTTGTTCCTCCTCATTTTCACGACCGTAATCATGAAGTTCTTATAGTTCCTCCAATTCAAGAACATGAACTAGAGATACCCATTGGCGTTCTTGAGGCAGCTACTGAAAATTTCTCTGTTTCTAATAAGATAGGAGAGGGTGGTTTTGGATCAGTTTACAAGGGAAAGCTCCCAAATGGGCAAGAAATTGCAGTAAAAAAGCTAGCAGAAGCATCAGGTCAAGGGTTGCAGGAGTTCAAAAACGAGGTCCTTTTCATTTCTCAGCTTCAACATCGAAATCTTGTCAAGCTTCTTGATGATCAAAGACGTTCGTCGCTCACTTGGCCAAGAAGAATCGATATCATAATTGGCATAGCTCGAGGACTTCTGTATCTCCATCGAGATTCAAGGCTTCGAATCATACATAGAGATCTTAAAGCTGCTAATATTTTGTTAGACAATGAAATGAAACCGAAGATTTCTGACTTTGGTATGGCACGTATGTTTCGCGAAGATCAAACCGAAACAAAAACGAGAAGAGTTGTTGGAACTTATGGTTACATGTCTCCTGAATATGTTATAGACGGTTATTTTTCAATGAAGTCTGATGTTTTTAGCTTTGGAGTGATGGTTCTAGAAATCGTTAGTGGTAAGAAGAACAAAGGGTTTTTTCATCCCGAGCATCAACTCAATCTTCTTGGACATGCATGGAATCTTTGGAAGGAAGGAAGGAGCTTGGAATTAATAGATGTAATATTGGAGGATCAATTTGATGAACATGAAGCTTTGAGATATATAAATATTGGGTTGTTATGTGTTCAAAGACGTCCAGAAGACAGGCCAATTATGTCGGCTGTGGTATCCATGTTGGAGAATGAGAACATGAGATTAATGGTTCCTGAACGACCTGGGTTCTATGAGGAAAGGTTCATAGAGACTGGTATTGATTCATCATTAAATGATCAACTAAGTTCTTCATCTAATAATGTCACTGTTACATTGCTTGATGGACGTTAA 2373 40.41 MTPTSNLLSSLFFFTLIPLFSRNSIADDILKQGQSINDTQSIVSAAEIFELGFFSQPQATNLKYLAIWYKGVVPKTVVWVANRDTPVLSSSATLNFRRDGNLVLLNQTGAAFWWSNSTKSIQNPIAQLLDTGNLVLRDSKSEDYVWQSFDYPTDTLLPGMKIGWDSKTGLNRKLKSWTSSNDVSSGEFSFSLNTNGLPQFFVHKGNKTMFRGWPWFDHDFGQSYGNGFNYDLVFDVSTEISFSYNDSAHSRTRIVMDSSGSILRHEWNDEGEKWRKAYSFDGAGCNDYDLCGNFGLCNPAVTTSCGCLYGFEQISTKNLSNGCVRRDPKICEAGDGFIKISKVKWPDSTGDSVKMKLGVKDCEAECLKDCGCLAYGTVQIPKIGLACVNWFHKLVDIRYVPDVGSGDDIYVRVAASELESADEKRSVAVVVAVPIVSVMVFLGLIGGWFFIRRRARGKAFVPPHFHDRNHEVLIVPPIQEHELEIPIGVLEAATENFSVSNKIGEGGFGSVYKGKLPNGQEIAVKKLAEASGQGLQEFKNEVLFISQLQHRNLVKLLDDQRRSSLTWPRRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDNEMKPKISDFGMARMFREDQTETKTRRVVGTYGYMSPEYVIDGYFSMKSDVFSFGVMVLEIVSGKKNKGFFHPEHQLNLLGHAWNLWKEGRSLELIDVILEDQFDEHEALRYINIGLLCVQRRPEDRPIMSAVVSMLENENMRLMVPERPGFYEERFIETGIDSSLNDQLSSSSNNVTVTLLDGR 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1872334 1875971 - Carg26521-RA Car18g00312 166014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00312 790 Pfam D-mannose binding lectin 76 177 IPR001480 -
Car18g00312 790 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Car18g00312 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Car18g00312 790 ProSiteProfiles PAN/Apple domain profile. 331 414 IPR003609 -
Car18g00312 790 ProSitePatterns Protein kinases ATP-binding region signature. 503 526 IPR017441 GO:0005524
Car18g00312 790 Pfam Protein tyrosine and serine/threonine kinase 552 742 IPR001245 GO:0004672|GO:0006468
Car18g00312 790 ProSiteProfiles Protein kinase domain profile. 497 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00312 790 Pfam PAN-like domain 331 397 IPR003609 -
Car18g00312 790 Pfam S-locus glycoprotein domain 207 313 IPR000858 GO:0048544
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00553 Car-Chr8:3462995 Car18g00312 Car-Chr18:1872334 1.61E-126 dispersed
Car09g00733 Car-Chr9:4358175 Car18g00312 Car-Chr18:1872334 4.88E-29 dispersed
Car09g00824 Car-Chr9:5016207 Car18g00312 Car-Chr18:1872334 0 dispersed
Car13g00563 Car-Chr13:7513416 Car18g00312 Car-Chr18:1872334 3.67E-07 dispersed
Car16g00582 Car-Chr16:3649898 Car18g00312 Car-Chr18:1872334 9.34E-74 dispersed
Car18g00312 Car-Chr18:1872334 Car19g00748 Car-Chr19:8338962 3.97E-120 dispersed
Car18g00311 Car-Chr18:1868504 Car18g00312 Car-Chr18:1872334 1.11E-49 tandem
Car13g00565 Car-Chr13:7526520 Car18g00312 Car-Chr18:1872334 4.65E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89514 PF07714 PK_Tyr_Ser-Thr 8.80E-28 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00312 - - cmos:111456701 1500.34