Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00320 ATGAATGATTTATTCTCCAATTCCTTCAAAAAATACACTGATCTGAAGGAACAGGCGTTTCTGGACAGCATGGAGCCTGGGAATGAGAGTGTGAATTTGGACAAATTCTTTGAGGAGGTTGAGAATGTTAAGGATGACATGAAACAGGTGGAGAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGTAAGATTGTACATAATGCTAAGACTATGAAGGAGCTGAGGTCTAGAATGGAGGGCGATGTGGGTCTGGTTTTAAAGCGTGTTAAAATGATCAAAGGGAAGCTTGAGGCTCTTGAGCGTTCTAATGCTGCTCATCGGAACCTCCCTGGCTGTGGCCCTGGCTCCTCTGCTGATCGTACCAGAACCTCTGTTGTTAGCGGCTTGGGAAAGAAGCTTAAGGATGTTATGGATGATTTTCAAGGGCTTAGAGCTCGAATGAACGCCGAGTACAAAGAAACCGTCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGCGAGAGCTTCCTTCAGAAAGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGATACCATTTCAGAGATTCAAGAACGACACGACGCAGTGAAGGAGATCGAGAAGAATCTGCTTGAGCTGCATCAGATATTCTTGGACATGGCAGCACTGGTGGAAGCCCAAGGACACCAGCTGAATGACATCGAAAGCCATGTGGCTCATGCCAACTCCTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCTCGGGAGTATCAGAAAAGCTCAAGGAAATGGACTTGCTATGCCGTCATATTGGGTATCGTTCTACTCATCATTCTTCTGCTACCAATATTGAATGTCATTTTGCCTCATTTGTTGTAG 912 45.07 MNDLFSNSFKKYTDLKEQAFLDSMEPGNESVNLDKFFEEVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRSRMEGDVGLVLKRVKMIKGKLEALERSNAAHRNLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLIILLLPILNVILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1958807 1960277 + Carg14655-RA Car18g00320 166022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00320 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Car18g00320 303 CDD SNARE_syntaxin1-like 202 264 - -
Car18g00320 303 Pfam SNARE domain 240 291 IPR000727 -
Car18g00320 303 CDD SynN 33 190 IPR006011 GO:0016020
Car18g00320 303 SMART tSNARE_6 198 265 IPR000727 -
Car18g00320 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Car18g00320 303 Coils Coil 33 67 - -
Car18g00320 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car18g00320 303 Gene3D - 33 160 - -
Car18g00320 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Car18g00320 303 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Car18g00320 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Car18g00320 303 PANTHER SYNTAXIN 6 294 IPR045242 -
Car18g00320 303 Gene3D - 193 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00335 Car-Chr14:1634408 Car18g00320 Car-Chr18:1958807 7.22E-110 dispersed
Car14g00978 Car-Chr14:7045782 Car18g00320 Car-Chr18:1958807 1.65E-92 dispersed
Car13g00552 Car-Chr13:7435500 Car18g00320 Car-Chr18:1958807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00320 K08486 - csv:101217140 521.546