Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00352 ATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACCAAATTTTCCCACACAATTTGCTACCGTTTAGAGTCCTTACGATTGCCTTCCTTTCCTATCACAGCTCCTTCTCATCCTAAATCTACCCTTAACAAGCAGAGGTCTCTATCTCCACCTTCACAAACTACACTCTTAAGCACATTTAAGGATGCACGTAATGATTCGAAGCGATTTTCAACTCCGCAACCTCGTAGACGAGAGCCGAGAGAAGAGAAGGGTAAAAGGGTATTCAATAAAGAAGCTAAGGTGCATAATTTCTCTAAGGAAGAGAAGTTAAGAAGCCCTGTAAGGCATCTTGCATCATTTAAAGGCAATGAGAGATCCACGTTCATGAAGGAGGGTTCTTGGACCAAATTGTTTGAACACAAAAGAGGGAAGGTCACTGCTGTTGATGCTGTTGATGAATTCTCTGTTGACTTGTCTAAGTTGTATTTTGGATTTAAATTTGCTTATGGAGCTCATAGTTGCCTTTACCACGGACTTTACTTCGACAAAGTTGTTGCTATTAAGGTCATCAATCTACCAAAACACGACGAAAATGGCGATCTTGCAGGTCGCATAACAAAGCAGTTTGGTCGGGAAGTAATCCTTTTATCTCGTCTTCACCATCCCAATGTTATTAAGTTGGTAGCAGCTTGCAGAAAGCCTGGTTATTGGATCATAACAGAGTATCTATCTCAAGGTTCGTTAAGGGCATATCTACACAAACTTGAAAACAAATCTCTACCACTTCAAAAACTGATTGCCATTGCATTGGACATTGCTCGTGGAATGGAATACATTCATTCGCAACGCATCATTCATCGAGATCTCAAACCCGAAAACGTTCTTATCGATCAAGACTTTTGTCTTAAGATTGCTGATTTTGGCATTGCTTGTGAGGAAGCACATTGTGATACACTGGCCGACGATCTCGGAACTTACCGTTGGATGGCTCCCGAGATGATCAAACGTAAACATTACGGACGGAAGGTCGATCTCTACAGCTTTGGACTTATCCTGTGGGAATTGGTGGCAGGAAGAATCCCTTATGAGAATATGACTCCAATCCAAGCAGCTTATGCAGTTGTTAACAAGAATATCCGACCAGTCGTCCCGAGCGAGTGTCCTCCGGTGATGCGGGGATTGATCGAGCAATGTTTGTCAGTGCAACCAGCGAACCGGCCGGAGTTTTGGGAGGTGGTGAAAGTGCTAGAGCAAGTTGAGAGTTCAGTTGGGGGAGATGGGACATTGATGAATGTAGAGCAGAAGCCAAGTTGGGAAGTTCACAAGAAAGGTTTAAAGCATTGGATACAAAAGCTTGGTACTCATCATTCCCACACTTCTCTATCCTCCAAATCTAAATTCATATGA 1389 42.69 MEEDPNSWLRRTKFSHTICYRLESLRLPSFPITAPSHPKSTLNKQRSLSPPSQTTLLSTFKDARNDSKRFSTPQPRRREPREEKGKRVFNKEAKVHNFSKEEKLRSPVRHLASFKGNERSTFMKEGSWTKLFEHKRGKVTAVDAVDEFSVDLSKLYFGFKFAYGAHSCLYHGLYFDKVVAIKVINLPKHDENGDLAGRITKQFGREVILLSRLHHPNVIKLVAACRKPGYWIITEYLSQGSLRAYLHKLENKSLPLQKLIAIALDIARGMEYIHSQRIIHRDLKPENVLIDQDFCLKIADFGIACEEAHCDTLADDLGTYRWMAPEMIKRKHYGRKVDLYSFGLILWELVAGRIPYENMTPIQAAYAVVNKNIRPVVPSECPPVMRGLIEQCLSVQPANRPEFWEVVKVLEQVESSVGGDGTLMNVEQKPSWEVHKKGLKHWIQKLGTHHSHTSLSSKSKFI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2176811 2178698 - Carg14623-RA Car18g00352 166054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00352 462 MobiDBLite consensus disorder prediction 62 85 - -
Car18g00352 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Car18g00352 462 MobiDBLite consensus disorder prediction 34 61 - -
Car18g00352 462 MobiDBLite consensus disorder prediction 30 85 - -
Car18g00352 462 ProSiteProfiles Protein kinase domain profile. 155 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00352 462 Pfam Protein tyrosine and serine/threonine kinase 176 410 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01180 Car-Chr6:8675117 Car18g00352 Car-Chr18:2176811 2.57E-22 dispersed
Car13g00733 Car-Chr13:8442788 Car18g00352 Car-Chr18:2176811 4.36E-103 dispersed
Car18g00156 Car-Chr18:842274 Car18g00352 Car-Chr18:2176811 1.15E-103 dispersed
Car13g00524 Car-Chr13:7267270 Car18g00352 Car-Chr18:2176811 4.02E-41 wgd
Car18g00352 Car-Chr18:2176811 Car03g01137 Car-Chr3:9152517 0 wgd
Car18g00352 Car-Chr18:2176811 Car07g00203 Car-Chr7:1135574 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89516 PF07714 PK_Tyr_Ser-Thr 4.60E-57 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00352 - - csv:101222817 664.455