Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00388 ATGATGGCGGAGAGAAACAAGTATGAAGACGACGAGGGTGGAATCAAGCTATTTGGGACAACAATTACGTTGCAAAACAAGAGGCAAATGAAAGAAGAAGACACCAACAAATCAGAATCAGCTGAAAAAAAACCGGACAAGATGATTCCTTGCCCAAGATGCAAAAGCCCCGACACCAAATTTTGTTATTTCAATAACTACAACGTTAATCAGCCAAGACATTTCTGTAAGGGCTGCCAGAGATACTGGACGGCCGGTGGCGCCCTCCGCAACGTCCCTGTCGGAGCCGGCCGCCGGAAAACCAAGCCTCCTTGTCGGACCTTTGATGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATGGTGGCGGTGCAGCCGTTTGAGTTGGAGGAGTGGCACGGTGGTTTCAACCAAATTTCACCGGTGAAGCGGCGGAGAGATTGTCAAGATGGTCAAACTTGTTGA 468 48.93 MMAERNKYEDDEGGIKLFGTTITLQNKRQMKEEDTNKSESAEKKPDKMIPCPRCKSPDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFDGLPENCVFDSSGMVAVQPFELEEWHGGFNQISPVKRRRDCQDGQTC 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2375129 2375596 - Carg14586-RA Car18g00388 166090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00388 155 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Car18g00388 155 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Car18g00388 155 MobiDBLite consensus disorder prediction 27 47 - -
Car18g00388 155 Coils Coil 24 44 - -
Car18g00388 155 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 11 148 - -
Car18g00388 155 PANTHER CYCLIC DOF FACTOR 2 11 148 IPR045174 GO:0003700|GO:0006355
Car18g00388 155 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Car18g00388 155 MobiDBLite consensus disorder prediction 19 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00388 - - - cmax:111490555 336.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g01185 Car18g00388 CCT
Car07g00157 Car18g00388 CCT
Car13g00488 Car18g00388 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00388 Car-Chr18:2375129 Car01g00729 Car-Chr1:4459414 2.14E-35 dispersed
Car13g00488 Car-Chr13:7090732 Car18g00388 Car-Chr18:2375129 3.82E-85 wgd
Car18g00388 Car-Chr18:2375129 Car03g01185 Car-Chr3:9370387 5.71E-50 wgd
Car18g00388 Car-Chr18:2375129 Car07g00157 Car-Chr7:943823 4.88E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g214 . . Bda02g00030 Bda09g00803 . Bpe01g00871 Bma14g01000 Bma01g01447 Cmo13g00632 Cmo18g00391 Cma03g01320 Cma07g00189 Car03g01185 Car07g00157 Sed10g0236 Cpe09g00808 Cpe10g00145 Bhi03g00282 Tan03g2576 Cmetu04g2899 . Hepe04g1916 . . Cla01g02318 Cam01g2430 Cec04g2078 Cco04g2154 Clacu01g2452 Cmu01g2315 Cre04g1984 . . Cone6ag0960 Cone9ag0968 Lsi01g00243 Csa06g03703 Chy12g00096 Cme08g00224 Blo08g00653 . . Bda07g00980 . Bpe08g00766 Bma07g00840 Bma11g00999 Sed01g2154 Cmo03g01322 Cmo07g00184 Cma13g00606 Cma18g00411 Car13g00488 Car18g00388 Cpe19g01067 Cpe20g00461 Bhi08g02203 Tan05g2493 Cmetu12g2109 Lac10g0947 Hepe07g1867 . . Cla03g00724 Cam03g0662 Cec03g0636 Cco03g0672 Clacu03g0770 Cmu03g1367 Cre03g0949 Lsi02g00805 Csa01g02327 Chy02g00228 Cme12g01293
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 5.4e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 2.8e-41 165.6
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.0e-40 161.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.0e-40 161.8
Car15g01176 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.3e-39 160.2
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 5.3e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-41 166.8
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.8e-38 154.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.4e-37 152.5
Car04g02541 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 67.4 9.9e-40 161.4
Car14g00128 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 1.9e-38 157.1
Car06g00263 CCT,CST,ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.7e-37 153.3
Car01g00540 CCT,CST,ECH 55 129 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 58.9 7.8e-37 151.8
Car13g00103 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Car15g01176 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 74.0 6.0e-40 162.2
Car06g00758 . 87 222 C2C2-Dof Transcription Factor Family AT5G39660 56.9 3.4e-38 156.8
Car01g00540 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 9.1e-40 161.8
Car13g00103 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.5e-37 154.5
Car03g00379 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Car03g00379 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.1e-37 152.5
Car11g00205 CCT,CST 26 315 C2C2-Dof Transcription Factor Family AT5G60850 51.3 1.4e-48 190.7
Car10g00264 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 9.2e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008695 0 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5154 PF02701 zf-Dof 1.90E-31 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00388 Car_Chr18 FPKM 0.205128 0.075505 30.186075 29.151609 0.267158 0.354154 0.526825 48.359959 48.381378 53.017212