Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car18g00388 | ATGATGGCGGAGAGAAACAAGTATGAAGACGACGAGGGTGGAATCAAGCTATTTGGGACAACAATTACGTTGCAAAACAAGAGGCAAATGAAAGAAGAAGACACCAACAAATCAGAATCAGCTGAAAAAAAACCGGACAAGATGATTCCTTGCCCAAGATGCAAAAGCCCCGACACCAAATTTTGTTATTTCAATAACTACAACGTTAATCAGCCAAGACATTTCTGTAAGGGCTGCCAGAGATACTGGACGGCCGGTGGCGCCCTCCGCAACGTCCCTGTCGGAGCCGGCCGCCGGAAAACCAAGCCTCCTTGTCGGACCTTTGATGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATGGTGGCGGTGCAGCCGTTTGAGTTGGAGGAGTGGCACGGTGGTTTCAACCAAATTTCACCGGTGAAGCGGCGGAGAGATTGTCAAGATGGTCAAACTTGTTGA | 468 | 48.93 | MMAERNKYEDDEGGIKLFGTTITLQNKRQMKEEDTNKSESAEKKPDKMIPCPRCKSPDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFDGLPENCVFDSSGMVAVQPFELEEWHGGFNQISPVKRRRDCQDGQTC | 155 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2375129 | 2375596 | - | Carg14586-RA | Car18g00388 | 166090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car18g00388 | 155 | ProSiteProfiles | Zinc finger Dof-type profile. | 49 | 103 | IPR003851 | GO:0003677|GO:0006355 | |
Car18g00388 | 155 | Pfam | Dof domain, zinc finger | 46 | 102 | IPR003851 | GO:0003677|GO:0006355 | |
Car18g00388 | 155 | MobiDBLite | consensus disorder prediction | 27 | 47 | - | - | |
Car18g00388 | 155 | Coils | Coil | 24 | 44 | - | - | |
Car18g00388 | 155 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 11 | 148 | - | - | |
Car18g00388 | 155 | PANTHER | CYCLIC DOF FACTOR 2 | 11 | 148 | IPR045174 | GO:0003700|GO:0006355 | |
Car18g00388 | 155 | ProSitePatterns | Zinc finger Dof-type signature. | 51 | 87 | IPR003851 | GO:0003677|GO:0006355 | |
Car18g00388 | 155 | MobiDBLite | consensus disorder prediction | 19 | 47 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car03g01185 | Car18g00388 | CCT | |
Car07g00157 | Car18g00388 | CCT | |
Car13g00488 | Car18g00388 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car18g00388 | Car-Chr18:2375129 | Car01g00729 | Car-Chr1:4459414 | 2.14E-35 | dispersed | |
Car13g00488 | Car-Chr13:7090732 | Car18g00388 | Car-Chr18:2375129 | 3.82E-85 | wgd | |
Car18g00388 | Car-Chr18:2375129 | Car03g01185 | Car-Chr3:9370387 | 5.71E-50 | wgd | |
Car18g00388 | Car-Chr18:2375129 | Car07g00157 | Car-Chr7:943823 | 4.88E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5154 | PF02701 | zf-Dof | 1.90E-31 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car18g00388 | - | - | cmax:111490555 | 336.65 |