Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00388 ATGATGGCGGAGAGAAACAAGTATGAAGACGACGAGGGTGGAATCAAGCTATTTGGGACAACAATTACGTTGCAAAACAAGAGGCAAATGAAAGAAGAAGACACCAACAAATCAGAATCAGCTGAAAAAAAACCGGACAAGATGATTCCTTGCCCAAGATGCAAAAGCCCCGACACCAAATTTTGTTATTTCAATAACTACAACGTTAATCAGCCAAGACATTTCTGTAAGGGCTGCCAGAGATACTGGACGGCCGGTGGCGCCCTCCGCAACGTCCCTGTCGGAGCCGGCCGCCGGAAAACCAAGCCTCCTTGTCGGACCTTTGATGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATGGTGGCGGTGCAGCCGTTTGAGTTGGAGGAGTGGCACGGTGGTTTCAACCAAATTTCACCGGTGAAGCGGCGGAGAGATTGTCAAGATGGTCAAACTTGTTGA 468 48.93 MMAERNKYEDDEGGIKLFGTTITLQNKRQMKEEDTNKSESAEKKPDKMIPCPRCKSPDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFDGLPENCVFDSSGMVAVQPFELEEWHGGFNQISPVKRRRDCQDGQTC 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2375129 2375596 - Carg14586-RA Car18g00388 166090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00388 155 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Car18g00388 155 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Car18g00388 155 MobiDBLite consensus disorder prediction 27 47 - -
Car18g00388 155 Coils Coil 24 44 - -
Car18g00388 155 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 11 148 - -
Car18g00388 155 PANTHER CYCLIC DOF FACTOR 2 11 148 IPR045174 GO:0003700|GO:0006355
Car18g00388 155 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Car18g00388 155 MobiDBLite consensus disorder prediction 19 47 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01185 Car18g00388 CCT
Car07g00157 Car18g00388 CCT
Car13g00488 Car18g00388 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00388 Car-Chr18:2375129 Car01g00729 Car-Chr1:4459414 2.14E-35 dispersed
Car13g00488 Car-Chr13:7090732 Car18g00388 Car-Chr18:2375129 3.82E-85 wgd
Car18g00388 Car-Chr18:2375129 Car03g01185 Car-Chr3:9370387 5.71E-50 wgd
Car18g00388 Car-Chr18:2375129 Car07g00157 Car-Chr7:943823 4.88E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5154 PF02701 zf-Dof 1.90E-31 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00388 - - cmax:111490555 336.65