Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00403 ATGATGGTTTCTGATATCCCGATTTGCCACACTTGTGGTGAGCAAGTCGGAGTTGATACCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCAATTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATCAAGGAAGGCCGCAATGTTTGCTTGCGGTGTGGCTCGCCATTTGACAAGAATTTACTGATGGATGATACAAAGACATCAGGAAATCAACACACCATGGCATCTCATCTCAGTCATTCTCAGGATGTTGGAGTTCATGCTAGACATGTCAGTAGCGTATCAACTGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGTCTACTGTGAAGACAGAACAAGAAGCTCAAGTTCCACCCCAACAACAAATGGAAGAGAAGCAGATTTCAGAGGAGGCTGTAGTTACACACTCATTTTCGTCAGTTTATCCGATTCCGTCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGGTCTTTTCTTTCAATATAGGATTACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGTGAAATCTGGTTCGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCTGTCTGCAGGGACACATTTATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCTTTGAAAGAACCTCCTCTAATCACTGCGAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCCGATGACGGTGCAGCTATGCTCACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGGAAATGGGTTCCATTCTGCAAAAAATTCTCCATTGAACCTCGAGCTCCTGAGTTTTACTTCTCCCAGAAAATAGACTATTTGAAAGATAAAGTACAACCTTCTTTTGTAAAGGAACGTAGAGCTATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTGGCAAAGGCTCAAAAAACACCTGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAACAATCCACGTGATCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACGTAGAGGGAAATGAACTTCCTCGACTAGTCTACGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGGGTATCTGCAGTCCTCACAAATGCCCCCTTCATTCTTAACCTTGACTGTGATCACTATGTTAACAATAGTCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTTGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACGGTTTTCTTCGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCACTCTATGGCTACGGACCTCCTTCCATGCCTAGCTTATCTAAGACATCCTCGTCATCTTGCTCTTGGTGTGGCTGCTGCTCTTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTATGAGAGATCAATGCTGATTTCTCAACTGAGCTTTGAGAAAACTTTCGGATTGTCGTCTGTGTTTATTGAGTCTACGCTAATGGAAAATGGAGGAGTAGCAGAATCTGCAAATCCGTCGACTTTGATCAAGGAAGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGTCCGCTTGGGGAAAAGAGATTGGTTGGATATATGGGTCAGTGACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGGTGGAGGTCCATCTACTGCATGCCATTTAGGCCAGCATTCAAAGGGTCCGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACACTGTCCATTATGGTATGGATTTGCAGGCGGCCGCCTCAAATGGCTCCAAAGAATGGCTTACATAAACACCATTGTCTATCCCTTCACCTCGCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTGCTCACAGGAAAGTTCATCATTCCAACGCTCTCGAACCTAGCAAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACGAGTGTCCTCGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCGGCTCATCTCTTTGCTGTCTTCCAAGGTTTCCTAAAGATGTTAGCTGGTGTCGACACCAACTTCACGGTTACAGCAAAGGCAGCTGAGGACACTGAGTTTGGAGAGCTTTACATGGTGAAATGGACGACACTTCTGATCCCTCCGACAACCCTTATCGTCATCAACCTAGTCGGTGTCGTTGCGGGATTTTCTGATGCATTAAATGGTGGATATGAAGCATGGGGTCCTCTTTTTGGCAAGGTATTCTTTGCGTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAGAACAGGACTCCAACCATTGTTGTTCTTTGGTCAGTGCTGTTGGCCTCAGTTTTCTCACTTGTTTGGGTGAAGATTAACCCATTTGTGAACCAGGTTGACAGTACAGCCGTTGCACAAAGCTGCATTGCTATAGATTGTTGA 2949 44.42 MMVSDIPICHTCGEQVGVDTNGEVFVACHECQFPICKVCVQYDIKEGRNVCLRCGSPFDKNLLMDDTKTSGNQHTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRSTVKTEQEAQVPPQQQMEEKQISEEAVVTHSFSSVYPIPSSRLTPYRIVIIMRLIILGLFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKSAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPFRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDTEFGELYMVKWTTLLIPPTTLIVINLVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTAVAQSCIAIDC 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2468004 2475490 - Carg14571-RA Car18g00403 166105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00403 982 Pfam Zinc-binding RING-finger 7 60 IPR027934 -
Car18g00403 982 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 551 580 IPR017896 -
Car18g00403 982 MobiDBLite consensus disorder prediction 115 146 - -
Car18g00403 982 Pfam Cellulose synthase 254 972 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00922 Car-Chr9:5677702 Car18g00403 Car-Chr18:2468004 4.91E-104 dispersed
Car10g00420 Car-Chr10:2110337 Car18g00403 Car-Chr18:2468004 0 dispersed
Car18g00403 Car-Chr18:2468004 Car04g01268 Car-Chr4:7351698 1.32E-10 dispersed
Car13g00472 Car-Chr13:7010740 Car18g00403 Car-Chr18:2468004 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00403 K10999 - csv:101208988 1891.32