Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00408 ATGGCTGCTGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCGTTGGAGGCGTTTTTGGCTCCCGTTGATCTCTCCAATGTCGCCTTAGTTCAAACTCTAGGGATCGTTGCGACGGAGCTCGTTTCGCGATTTTCAGAGAAGTCTTTCTTCTTCCAGCGAAGAAATTCCCGATCTCTGATTAGGAAACTTGAGGTTTGTCTCGTATTTTTGGATTGCTTGAAGGATATTGATGCGACTTTGCCTCACACTGCGTTGCTCTGTTTGAAAGAGCTTTATTTATTGTTGTATCGATCTAAAATACTTCTTGATTATTGCTCTGAATCAAGTAAGTTATGGCTATTGCTTCAGAACCAAACGATTTCAGGGCATTTCAATGATTTGAATTTGGAGTTATTGACATTTTTAGATGTTTTTCCTCTTGAGGAAGTGGAATTAGGAGTGGATGTTAGAGAACAGGTTGAGCTTTTGCAGAAGCAATTGAGAAGGACGAGGATGTTCGTCGATGAACACGTCGAGACGTTGAGGACTCGTTTCCTTTCGTTTCTTGACGAGTTTGAGAACGGTCGGCTTCCAAATCAGAGGGAATTGAGGGAGTTTTTCGTGGATAAGTTGGGGATTCGGAATGCGAAGAGTTGTAGAACTGAAATTGAGTTTCTGGAGGAGCAGATTGTCAATCATGATGGCGACGTCGAGCCCACCGTAGCGGTGTTGAACGGTTTCGTTGCTTTTACGAGATATAGCAGGTTTTTCCTCTTTGGATTTGAGGAAGATGATATTGATTCAGGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTATGCAGGAGATTGCTGATACGTTCTTAACAATTCCAAGGGATTTTTGCTGCCCAATATCTCTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAAACATATGATCGTAGTTCGATCACGAGATGGTTGGAAGAAGGGCACAACACTTGCCCGAAATCAGGGCAAATGCTCGTCCATACCCGTCTCGCTCCGAACCGTGCGTTAGGGAATTTGATCATGCAATGGTGTATAGCACATGGAGTTCCTTATGATCCACCAGAGGGGATGGATGCATCTGTAGAAAGTTATGCAATGGCTTCACCTACACGAGCTGCTCTCGAAGCCAACCGAGCAACAGCTATGATTCTTATTCAACAGTTATCAATTGGATCACAGGATGCGAAGACGATTGCTGCTCGGGAGATTCGTTTGTTGGCGAAAACGGGGAAAGAAAACCGTGCTTTCATTGCCGAAGCTGGTGCCATCCCTCATCTTCAAAAGTTGCTGACTTCCCCAAACCCAGTAGCACAGGAGAATTCTGTAACAGCTATGCTTAACCTTTCAATATATGACAAGAACAAAAGTTTGATTATGCGCGAGGTAGGGTGCTTAGGATCGATAACCGAAGTGTTGAGATCTGGACATAGTACCGAAGCACGGGAAAACGCTGCGGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTAGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAACCTCTCGACTCACACGGAGAATTGCATTCGGATGATCGACGCTGGGGCAGTAACAGCTCTCGTAGAAGCACTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGGTTGTTCGACAGCCGATAGGGGCTGAAGCAGTCGGTAAAGACGAGAGAGCTGTAGCAGGATTGATGGCAATGATGCGATGTGGAACACCAAGAGGAAAAGAGAACGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGCGGAGCTGCCACGACCGAGCAGGTGTTCAAGGCTCCTGCATTGGCTGGGTTGCTCCAAATGCTCCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCATCGCTAGCTAGAGTGTTCCAAAGATGCGAGCAAGTCACTATGCATTATGCCTATGCAAGTAACTCGACCCCTAACAGGGATTCGAGCTTCCCTAGCGAGGTGTCTGTACCGATATCCATATCGGTACCCGTCGTATAG 2127 46.36 MAAAAIFSSLRRRRSPSLEAFLAPVDLSNVALVQTLGIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDCLKDIDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQTISGHFNDLNLELLTFLDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDEHVETLRTRFLSFLDEFENGRLPNQRELREFFVDKLGIRNAKSCRTEIEFLEEQIVNHDGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDDIDSGAANQKKLKKNLIMQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWLEEGHNTCPKSGQMLVHTRLAPNRALGNLIMQWCIAHGVPYDPPEGMDASVESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLTSPNPVAQENSVTAMLNLSIYDKNKSLIMREVGCLGSITEVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTENCIRMIDAGAVTALVEALGNEGVAEEAAGALALVVRQPIGAEAVGKDERAVAGLMAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEQVTMHYAYASNSTPNRDSSFPSEVSVPISISVPVV 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2545138 2547264 + Carg14566-RA Car18g00408 166110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00408 708 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Car18g00408 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Car18g00408 708 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Car18g00408 708 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Car18g00408 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00466 Car18g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00261 Car-Chr3:3805432 Car18g00408 Car-Chr18:2545138 1.20E-132 dispersed
Car07g01182 Car-Chr7:7160467 Car18g00408 Car-Chr18:2545138 1.12E-132 dispersed
Car15g00153 Car-Chr15:845062 Car18g00408 Car-Chr18:2545138 2.76E-125 dispersed
Car18g00408 Car-Chr18:2545138 Car13g00102 Car-Chr13:732289 2.70E-98 dispersed
Car13g00466 Car-Chr13:6978249 Car18g00408 Car-Chr18:2545138 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00408 - - csv:101204151 1176.77