Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00413 ATGGAGACGAATACAAGTAACAACGGAGTGAGGTTTCTGCTAGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCAGACGGAGGAGGCGGCGGAGGCGACGGAGGACGGGGAGGAGATCCATCCGGGAGTGAGATTGATGTATTCGGCAAATGAAGGCGATTTGGAAGCGATTAAGGAGCTTATAGATTCTGGAGTTGATGTTAATTTTCACGATGCTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGTTGCACGGAGATCGTCGATTTGTTGCTCCGGCGAGGAGCGGAGATTGACCCCAAAGACTGCTGGGGTAGTACGCCTCTCGCAGATGCTATATTCTACAAAAACCACGAAGTTATCAAATTATTGGAAAAAAGCGGCGCAAAACATCTGAAAGCTCCCATGCTCGTCAAGCATGCTCGTGAAGTCCCCGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTAACCAAGGGAACCTTCCATTTAGCATCATGGCGCGGAATCCGAGTTGCGGTCAAGGAGCTTCCCGAGGATGTGATTTCTGATGAGGATAAAGTGAACGCCTTTAGAGACGAGCTTGCATTGCTTCAGAAGATTCGACATCCGAACGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACCGAATATTTGCCTAAGGGAGATCTTTGCCAATTTTTACAGAAAAAAGGAGCTTTAAAACCAATTGTAGCTGTGAAATTTGCTCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAACAAACCTGCCCCGATCATCCACCGCGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAGCCTGAAAGTTGCAGACTTTGGAGTTAGCAAGCTGCTCACAGTCAAGGAGGATAAGCCACTGACTTGTCAAGACACTTCATGCCGATATGTTGCTCCAGAGGTTTTCAAGAACAATGGATATGATACTAAAGTGGATGTCTTCTCCTTTGCTTTAATACTACAAGAGATGATCGAAGGCCAACCGCCATTTTCAAACAAGAAAGAAAATGCCATTCTTAAAGAGTATGCAGGCGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTACGCGCATGGAATCAAAGAGTTGATTGAAGATTGCTGGCATGAAAAGCCATCAAAGAGACCAAATTTTAGGCTGATAATCTCAAGGCTTGAAACCATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTTCCAACGCTGAGATGCTTTCAGAACGCAGAGGAGAAGATGAGAAGAGGCCATCTCTCAAGCAGCCGGAGCCTCTCATCGAGATCTGCAAGCAGCATATGA 1377 46.19 METNTSNNGVRFLLGKQSSMAPERQTEEAAEATEDGEEIHPGVRLMYSANEGDLEAIKELIDSGVDVNFHDADNRTALHIAACQGCTEIVDLLLRRGAEIDPKDCWGSTPLADAIFYKNHEVIKLLEKSGAKHLKAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIRVAVKELPEDVISDEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLQKKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGSLKVADFGVSKLLTVKEDKPLTCQDTSCRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAGGVRPAFKAPAKCYAHGIKELIEDCWHEKPSKRPNFRLIISRLETIHHSLSHRRRWKLPTLRCFQNAEEKMRRGHLSSSRSLSSRSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2588834 2593676 + Carg14561-RA Car18g00413 166115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00413 458 MobiDBLite consensus disorder prediction 1 37 - -
Car18g00413 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 104 - -
Car18g00413 458 Pfam Protein tyrosine and serine/threonine kinase 167 411 IPR001245 GO:0004672|GO:0006468
Car18g00413 458 ProSiteProfiles Ankyrin repeat profile. 45 72 IPR002110 GO:0005515
Car18g00413 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Car18g00413 458 MobiDBLite consensus disorder prediction 1 24 - -
Car18g00413 458 ProSiteProfiles Protein kinase domain profile. 123 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00413 458 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01214 Car18g00413 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00035 Car-Chr2:281957 Car18g00413 Car-Chr18:2588834 6.27E-140 dispersed
Car04g01718 Car-Chr4:9842902 Car18g00413 Car-Chr18:2588834 2.34E-69 dispersed
Car18g00413 Car-Chr18:2588834 Car20g00218 Car-Chr20:1256883 0 dispersed
Car03g01214 Car-Chr3:9473607 Car18g00413 Car-Chr18:2588834 1.57E-100 transposed
Car19g00236 Car-Chr19:2383166 Car18g00413 Car-Chr18:2588834 2.67E-103 transposed
Car18g00413 Car-Chr18:2588834 Car03g01213 Car-Chr3:9472113 6.95E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89521 PF07714 PK_Tyr_Ser-Thr 2.00E-55 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00413 - - csv:101205123 798.89