Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car18g00413 | ATGGAGACGAATACAAGTAACAACGGAGTGAGGTTTCTGCTAGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCAGACGGAGGAGGCGGCGGAGGCGACGGAGGACGGGGAGGAGATCCATCCGGGAGTGAGATTGATGTATTCGGCAAATGAAGGCGATTTGGAAGCGATTAAGGAGCTTATAGATTCTGGAGTTGATGTTAATTTTCACGATGCTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGTTGCACGGAGATCGTCGATTTGTTGCTCCGGCGAGGAGCGGAGATTGACCCCAAAGACTGCTGGGGTAGTACGCCTCTCGCAGATGCTATATTCTACAAAAACCACGAAGTTATCAAATTATTGGAAAAAAGCGGCGCAAAACATCTGAAAGCTCCCATGCTCGTCAAGCATGCTCGTGAAGTCCCCGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTAACCAAGGGAACCTTCCATTTAGCATCATGGCGCGGAATCCGAGTTGCGGTCAAGGAGCTTCCCGAGGATGTGATTTCTGATGAGGATAAAGTGAACGCCTTTAGAGACGAGCTTGCATTGCTTCAGAAGATTCGACATCCGAACGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACCGAATATTTGCCTAAGGGAGATCTTTGCCAATTTTTACAGAAAAAAGGAGCTTTAAAACCAATTGTAGCTGTGAAATTTGCTCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAACAAACCTGCCCCGATCATCCACCGCGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAGCCTGAAAGTTGCAGACTTTGGAGTTAGCAAGCTGCTCACAGTCAAGGAGGATAAGCCACTGACTTGTCAAGACACTTCATGCCGATATGTTGCTCCAGAGGTTTTCAAGAACAATGGATATGATACTAAAGTGGATGTCTTCTCCTTTGCTTTAATACTACAAGAGATGATCGAAGGCCAACCGCCATTTTCAAACAAGAAAGAAAATGCCATTCTTAAAGAGTATGCAGGCGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTACGCGCATGGAATCAAAGAGTTGATTGAAGATTGCTGGCATGAAAAGCCATCAAAGAGACCAAATTTTAGGCTGATAATCTCAAGGCTTGAAACCATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTTCCAACGCTGAGATGCTTTCAGAACGCAGAGGAGAAGATGAGAAGAGGCCATCTCTCAAGCAGCCGGAGCCTCTCATCGAGATCTGCAAGCAGCATATGA | 1377 | 46.19 | METNTSNNGVRFLLGKQSSMAPERQTEEAAEATEDGEEIHPGVRLMYSANEGDLEAIKELIDSGVDVNFHDADNRTALHIAACQGCTEIVDLLLRRGAEIDPKDCWGSTPLADAIFYKNHEVIKLLEKSGAKHLKAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIRVAVKELPEDVISDEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLQKKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGSLKVADFGVSKLLTVKEDKPLTCQDTSCRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAGGVRPAFKAPAKCYAHGIKELIEDCWHEKPSKRPNFRLIISRLETIHHSLSHRRRWKLPTLRCFQNAEEKMRRGHLSSSRSLSSRSASSI | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2588834 | 2593676 | + | Carg14561-RA | Car18g00413 | 166115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car18g00413 | 458 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Car18g00413 | 458 | ProSiteProfiles | Ankyrin repeat region circular profile. | 73 | 104 | - | - | |
Car18g00413 | 458 | Pfam | Protein tyrosine and serine/threonine kinase | 167 | 411 | IPR001245 | GO:0004672|GO:0006468 | |
Car18g00413 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 45 | 72 | IPR002110 | GO:0005515 | |
Car18g00413 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 73 | 105 | IPR002110 | GO:0005515 | |
Car18g00413 | 458 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Car18g00413 | 458 | ProSiteProfiles | Protein kinase domain profile. | 123 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car18g00413 | 458 | Pfam | Ankyrin repeats (3 copies) | 45 | 132 | IPR002110 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car03g01214 | Car18g00413 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g00035 | Car-Chr2:281957 | Car18g00413 | Car-Chr18:2588834 | 6.27E-140 | dispersed | |
Car04g01718 | Car-Chr4:9842902 | Car18g00413 | Car-Chr18:2588834 | 2.34E-69 | dispersed | |
Car18g00413 | Car-Chr18:2588834 | Car20g00218 | Car-Chr20:1256883 | 0 | dispersed | |
Car03g01214 | Car-Chr3:9473607 | Car18g00413 | Car-Chr18:2588834 | 1.57E-100 | transposed | |
Car19g00236 | Car-Chr19:2383166 | Car18g00413 | Car-Chr18:2588834 | 2.67E-103 | transposed | |
Car18g00413 | Car-Chr18:2588834 | Car03g01213 | Car-Chr3:9472113 | 6.95E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89521 | PF07714 | PK_Tyr_Ser-Thr | 2.00E-55 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car18g00413 | - | - | csv:101205123 | 798.89 |